View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_1 (Length: 633)
Name: NF3624_low_1
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 276 - 622
Target Start/End: Original strand, 6515023 - 6515369
Alignment:
| Q |
276 |
tgaaccttaaagttttactttactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcttgg |
375 |
Q |
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| T |
6515023 |
tgaaccttaaagttttactctactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcctgg |
6515122 |
T |
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| Q |
376 |
gaaccattacatgatgtgaaagatgttacactgatgacaccatgtaaatccaatattcttgaagataacaattcacccagaggtccaagattatcagccg |
475 |
Q |
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| T |
6515123 |
gaaccattacatgatatgaaagatgttacactgatgacaccatgtaaatccaatattcttgaagataacaattcacccagaggtccaagattatcagccg |
6515222 |
T |
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| Q |
476 |
gaagctcctcgtcgcaaacttcatcgaatagaagttctcctgccaatagtaatgatagttcagggaaacatggaaatcatgaagttataaattcagacaa |
575 |
Q |
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| T |
6515223 |
gaagctcctcgtcgcaaacttcatcgaatagaagttctcctgccaatagtaatgatagttcagggaaacatggaaatcatgaagttataaattcagacaa |
6515322 |
T |
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| Q |
576 |
tactaagtgcttactttcttcaaaaccaccagtaagtacacatgccc |
622 |
Q |
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| T |
6515323 |
tactaagcgcttactttcttcaaaaccaccagtaagtacacatgccc |
6515369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 6514017 - 6514108
Alignment:
| Q |
18 |
atagttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatactcctaattgtgaagatttaaacaggtatgatac |
109 |
Q |
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| T |
6514017 |
atagttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatacccctaattgtgaagatttaaacaggtatgatac |
6514108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 6514146 - 6514230
Alignment:
| Q |
183 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatggactttggtccctcgtatcatttttgtggtcatttttt |
267 |
Q |
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| T |
6514146 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatgaactttggttcctcgtatcatttttggggtcatttttt |
6514230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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