View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_10 (Length: 311)
Name: NF3624_low_10
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 42692687 - 42692373
Alignment:
| Q |
1 |
caattagttagcatcatcattttccacttatttattgtttcatgcataacgtgagacgtgcatatatcgtgtgcctcgtgcaaaaaacaatgaaattaaa |
100 |
Q |
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| T |
42692687 |
caattagttagcatcaactttttcctcttatttattgttgcatgcataacgtgcgacgtgcatatatcgtgtgcctcgtgcaaaaaacaatgaaattaaa |
42692588 |
T |
|
| Q |
101 |
gcaagaggcatactctaatnnnnnnnngtaaga-gaatactcctttcggtcgcatttat---aagaaaaaacaaccttttaaatttattgaataattaat |
196 |
Q |
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| T |
42692587 |
gcaagaggcacactct-attaaaaaaagtaagaggaatactcctttcggtcgcatctataaaaaaaaaaaaaaaccttttaaatttatgaaataattaat |
42692489 |
T |
|
| Q |
197 |
ttatgtgatatataaatttaacatgtgagggtacatttcaac-nnnnnnnngtgagaaatataatacaacagttacaacttcatagttttatcatattca |
295 |
Q |
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| T |
42692488 |
ttatgtgatatataaatttaaaatgtgagagtacatttcaacaaaaaaaaagtgagaaatataatacaacagttacaacttcatagttttatcatattca |
42692389 |
T |
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| Q |
296 |
ttaatatattatcttc |
311 |
Q |
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| T |
42692388 |
ttaatatattatcttc |
42692373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 38779361 - 38779317
Alignment:
| Q |
152 |
catttataagaaaaaacaaccttttaaatttattgaataattaat |
196 |
Q |
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| T |
38779361 |
catttataagaaaaaacaattttttaagtttattaaataattaat |
38779317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 20269454 - 20269494
Alignment:
| Q |
153 |
atttataagaaaaaacaaccttttaaatttattgaataatt |
193 |
Q |
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| T |
20269454 |
atttataagaaaaaacaactttttagatatattgaataatt |
20269494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 28499911 - 28499867
Alignment:
| Q |
152 |
catttataagaaaaaacaaccttttaaatttattgaataattaat |
196 |
Q |
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| T |
28499911 |
catttataagaaaaaataactttttagatatattgaataattaat |
28499867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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