View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3624_low_13 (Length: 250)

Name: NF3624_low_13
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3624_low_13
NF3624_low_13
[»] chr7 (4 HSPs)
chr7 (23-107)||(42692923-42693004)
chr7 (191-250)||(42692780-42692839)
chr7 (38-98)||(10578183-10578243)
chr7 (38-110)||(13017783-13017855)
[»] chr4 (1 HSPs)
chr4 (37-101)||(37173713-37173777)
[»] chr3 (2 HSPs)
chr3 (36-91)||(33374616-33374671)
chr3 (38-98)||(54260099-54260159)
[»] chr6 (2 HSPs)
chr6 (38-98)||(1271404-1271464)
chr6 (38-106)||(10053054-10053122)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 42693004 - 42692923
Alignment:
Q  23 tgaagagcaacattattatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttga 107  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42693004 tgaagagcaacat---tatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaagttttga 42692923  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 42692839 - 42692780
Alignment:
Q  191 gatcgttcaaatatcatttctcatttcaaaacatgcagtatactctcttcatttgccaac 250  Q
    ||||||||||||| ||||||||||||  ||||||| ||||||||||||| ||||||||||    
T  42692839 gatcgttcaaataacatttctcattttgaaacatgtagtatactctcttgatttgccaac 42692780  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 10578243 - 10578183
Alignment:
Q  38 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 98  Q
    |||||||||||| |||||| |||||  ||||||| ||||| ||||||||| ||| ||||||    
T  10578243 ttatttgaacaactattttgtaggataatttgtgggacaaccaaaatatagaaagaaatgt 10578183  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 13017783 - 13017855
Alignment:
Q  38 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttgatac 110  Q
    ||||||||||||  ||||||| | || | ||||| |||||  |||||||||||| |||||||| |||||||||    
T  13017783 ttatttgaacaaccattttatggcacaacttgtgtgacaattaaaatatataaagaaatgtagtttttgatac 13017855  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 37173777 - 37173713
Alignment:
Q  37 attatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtagg 101  Q
    ||||||||||||| |||||  |||||| ||||||| ||||| ||||||| ||| |||||||||||    
T  37173777 attatttgaacaactatttcttaggacaatttgtgggacaaccaaaataaatatataaatgtagg 37173713  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 33374671 - 33374616
Alignment:
Q  36 tattatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaa 91  Q
    ||||||||||||||  |||||||| ||| |||||||| |||| |||||||||||||    
T  33374671 tattatttgaacaaccattttatatgacaatttgtgaaacaaccaaaatatataaa 33374616  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 54260099 - 54260159
Alignment:
Q  38 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 98  Q
    |||||||||||| |||||| ||| || ||||||| ||||| ||||||||| ||| ||||||    
T  54260099 ttatttgaacaactattttgtagaacaatttgtgggacaaccaaaatataaaaagaaatgt 54260159  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 1271464 - 1271404
Alignment:
Q  38 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgt 98  Q
    |||||||||||| |||||||| |||| ||||||| ||||| || |||||| ||| ||||||    
T  1271464 ttatttgaacaattattttatgggacaatttgtgggacaaccataatatacaaaaaaatgt 1271404  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 10053054 - 10053122
Alignment:
Q  38 ttatttgaacaaatattttataggactatttgtgagacaaacaaaatatataaataaatgtaggttttg 106  Q
    |||||||||||| |||||||| |||  | ||||| |||||  |||||||| ||| ||||||||||||||    
T  10053054 ttatttgaacaactattttattggataacttgtgggacaactaaaatatacaaagaaatgtaggttttg 10053122  T

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