View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_17 (Length: 221)
Name: NF3624_low_17
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13692781 - 13693001
Alignment:
| Q |
1 |
ggaaaaggagaggaaaaaccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgata |
100 |
Q |
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| T |
13692781 |
ggaaaaggagaggaaaaaccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgata |
13692880 |
T |
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| Q |
101 |
gagaaaggagtaaaggttacactcataactgtttattcatattggaagactatcaagaacaaaaatctttcttcaaatattgaagttgagagcatctcag |
200 |
Q |
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| T |
13692881 |
gagaaaggagtaaaggttacattgataactgtttattcatattggaagactatcaaaaacaaaaatctttcttcaaatattgaagttgagagcatctcag |
13692980 |
T |
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| Q |
201 |
atggctatgacgacgaagggt |
221 |
Q |
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| T |
13692981 |
atggctacgatgacggagggt |
13693001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13673595 - 13673386
Alignment:
| Q |
1 |
ggaaaaggagaggaaaaaccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgata |
100 |
Q |
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| T |
13673595 |
ggaaaaggaaaataaaaactatgtagctcactgtctgatcttaccttttccaggtcaaggtcacatgaatcctatgattcaattctcaaaacgtttgatc |
13673496 |
T |
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| Q |
101 |
gagaaaggagtaaaggttacactcataactgtttattcatattggaagactatcaagaacaaaaatctttcttcaaatattgaagttgagagcatctcag |
200 |
Q |
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| T |
13673495 |
cataaaggagtaaaagttacacttgtaactattatttccctttggagaactatcaagaacaaaaatctttcttcaaatattgatgttgaaagcatctcag |
13673396 |
T |
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| Q |
201 |
atggctatga |
210 |
Q |
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| T |
13673395 |
atggctatga |
13673386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13686332 - 13686448
Alignment:
| Q |
13 |
gaaaaaccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgatagagaaaggagta |
112 |
Q |
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||||||||||| | |||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
13686332 |
gaaaaaccatgcacctcactgtctcatcttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgtttaatagagaaaggagta |
13686431 |
T |
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| Q |
113 |
aaggttacactcataac |
129 |
Q |
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| T |
13686432 |
aagataacactaataac |
13686448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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