View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_3 (Length: 397)
Name: NF3624_low_3
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 50905987 - 50906353
Alignment:
| Q |
18 |
ttgatgacttactgcttcaagtgtcagagttctccatttaaaattggttaacagatataaggaggcaagagatcacagtttagtttgggtgagtttctag |
117 |
Q |
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| T |
50905987 |
ttgatgacttactgcttcaagtgtcagagttctccatttaaaattggttaacagatataaggaggcaagagatcacagtttagtttgggtgagtttctag |
50906086 |
T |
|
| Q |
118 |
ccttaaagaattgagatgattatttgactcttggttctgttttgtatgataaggtttgactcttagccaagatacacttttatgaatagttgaggctgca |
217 |
Q |
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| T |
50906087 |
ccttaaagaattgagatgattatttgactcttggttctgttttgtatgataaggtttgactcttagccaagatacacttttatgaatagttgaggctgca |
50906186 |
T |
|
| Q |
218 |
tggaattcaaattaaaggatttccgttatatgtgtgtttaaggacaacaactttgacgagaactccatgtgattatggtgtcctccaccttcttccaaca |
317 |
Q |
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| T |
50906187 |
tggaattcaaattaaaggatttccgttatatgtgtgtttaaggacaacaactttgacgagaactccatgtgattatggtgtcctccaccttcttccaaca |
50906286 |
T |
|
| Q |
318 |
tcacaagaagaatccaacttaataaataattggtaagaactaagacgttttattatgtggtatattc |
384 |
Q |
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| T |
50906287 |
tcacaagaagaatccaacttaataaataattggtaagaactaagacgttttattatgtggtatattc |
50906353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 45 - 384
Target Start/End: Complemental strand, 38042883 - 38042537
Alignment:
| Q |
45 |
agttctccatttaaaattggttaacagatataaggaggcaagagatcacagtttagtttgggtgagtttctagccttaaagaattgagatgattatttga |
144 |
Q |
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| T |
38042883 |
agttctccatttaaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaatcgagatgattatttaa |
38042784 |
T |
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| Q |
145 |
ctcttggttctg-ttttgtatgataaggtttgactcttagccaagatacacttttatgaatagttgaggctgcatggaattcaaattaaaggatttccgt |
243 |
Q |
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| | |||||||| ||||||||| | ||||||||| ||| || || |||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
38042783 |
cccgtggttctgtttttgtatgtttaggtttgacacttcgctaatatacacttatatgaatagttaaggctgcaaggaattcaaattaatggattgccgt |
38042684 |
T |
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| Q |
244 |
tatatgtgtgtttaaggacaacaac-tttg------acgagaactccatgtgattatggtgtcctccaccttcttccaacatcacaagaagaatccaact |
336 |
Q |
| |
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| T |
38042683 |
taattgcgggttttaggacaactccatgtgaatagcactggaagtccatgcgattctggtcttctccaccttcttcaaacatcacaagaagaatccaact |
38042584 |
T |
|
| Q |
337 |
taataaataattggtaagaactaagacgttttattatgtggtatattc |
384 |
Q |
| |
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|||| |||||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
38042583 |
taat-aataatcggtaagaactaagacgttttgttatgtgatatattc |
38042537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 45 - 384
Target Start/End: Complemental strand, 21634544 - 21634198
Alignment:
| Q |
45 |
agttctccatttaaaattggttaacagatataaggaggcaagagatcacagtttagtttgggtgagtttctagccttaaagaattgagatgattatttga |
144 |
Q |
| |
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||||||||||||||| ||| | ||||||| ||||||||||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||||| | |
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| T |
21634544 |
agttctccatttaaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaattgagatgattatttaa |
21634445 |
T |
|
| Q |
145 |
ctcttggttctg-ttttgtatgataaggtttgactcttagccaagatacacttttatgaatagttgaggctgcatggaattcaaattaaaggatttccgt |
243 |
Q |
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| T |
21634444 |
cctgtggttctgtttttgtatgtttaggtttgacacttcgctaatatacacttatatgaatagttaaggctgcaaggaattcaaattaatggattgccgt |
21634345 |
T |
|
| Q |
244 |
tatatgtgtgtttaaggacaacaac-tttgacgagaac------tccatgtgattatggtgtcctccaccttcttccaacatcacaagaagaatccaact |
336 |
Q |
| |
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|| || | |||| |||||||| | | ||| ||||| |||||| |||| |||| | ||||||||| ||| ||||||||||||||||||||||| |
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| T |
21634344 |
taattgcgcgttttaggacaactccatgtgaatagaactggaagtccatgcgattctggtcttctccacctttttcaaacatcacaagaagaatccaact |
21634245 |
T |
|
| Q |
337 |
taataaataattggtaagaactaagacgttttattatgtggtatattc |
384 |
Q |
| |
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|||| |||||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
21634244 |
taat-aataatcggtaagaactaagacgttttgttatgtgatatattc |
21634198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 17969622 - 17969528
Alignment:
| Q |
281 |
tccatgtgattatggtgtcctccaccttcttccaacatcacaagaagaatccaacttaataaataattggtaagaactaagacgttttattatgt |
375 |
Q |
| |
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|||||||||||||||| ||||| | ||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
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| T |
17969622 |
tccatgtgattatggtctcctctaacttcttcaaacattacaagaagaatccaacttaataattaattgttaagaactaagacgttttatcatgt |
17969528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 3072892 - 3072798
Alignment:
| Q |
281 |
tccatgtgattatggtgtcctccaccttcttccaacatcacaagaagaatccaacttaataaataattggtaagaactaagacgttttattatgt |
375 |
Q |
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|||||||||||||||| ||||| | ||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
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| T |
3072892 |
tccatgtgattatggtctcctctaacttcttcaaacattacaagaagaatccaacttaataattaattgttaagaactaagacgttttatcatgt |
3072798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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