View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_5 (Length: 376)
Name: NF3624_low_5
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 42601128 - 42600805
Alignment:
| Q |
16 |
tgaaaagaaacaaatgtgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaacaatatgttgaagagaaaaga |
115 |
Q |
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| T |
42601128 |
tgaaaagaaaaaaatgtgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaactatatgttgaagagaaaaga |
42601029 |
T |
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| Q |
116 |
gagnnnnnnn--cacgaaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacct |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42601028 |
gagaaaaaaaaacacgaaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacct |
42600929 |
T |
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| Q |
214 |
caagaacacaaggtggcagttaatcccaactaaattacaaaattggctcacgtgggaatcatgatctctcacgtggttatctaatttcacaattcacaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42600928 |
caagaacacaaggtggcagttaatcccaactaaattacaaaattggctcacg---------------------tggttatctaatttcacaattcacaac |
42600850 |
T |
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| Q |
314 |
tatcctatataatatcaaatgtgnnnnnnntacaatgaagagaat |
358 |
Q |
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| T |
42600849 |
tatcctatataatatcaaatgtgaaaaaaatacaatgaagagaat |
42600805 |
T |
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