View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_6 (Length: 366)
Name: NF3624_low_6
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 42929643 - 42929297
Alignment:
| Q |
1 |
ccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929643 |
ccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaat |
42929544 |
T |
|
| Q |
101 |
ctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacactatctttgaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929543 |
ctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacactatctttgaatgg |
42929444 |
T |
|
| Q |
201 |
caagctttgagtttcaccacctccaattgcagcagctttattattaacctctaaaatggagttggtctcatctggctcaaagaaaaaccgatcagaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929443 |
caagctttgagtttcaccacctccaattgcagcagctttattattaacctctaagatggagttggtctcatctggctcaaagaaaaaccgatcagaagat |
42929344 |
T |
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| Q |
301 |
aatccacgaatcacagtttcgatcgaatcaacttgtttggattcttg |
347 |
Q |
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| T |
42929343 |
aatccacgaatcacagtttcgatcgaatcaacttgtttggattcttg |
42929297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 50463289 - 50463383
Alignment:
| Q |
10 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
104 |
Q |
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|||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
7 |
aataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
82 |
Q |
| |
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|||||||||| ||||||| ||| |||| | |||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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