View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_7 (Length: 350)
Name: NF3624_low_7
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 10193451 - 10193160
Alignment:
| Q |
12 |
atgaactaaacagggcataggaagcttggacaatcttcaccttaaaagtcaatttttagggttgaccagttaagctgcacacaagcttcgtgtacttaac |
111 |
Q |
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| T |
10193451 |
atgaactaaacagggcataggaagcttggacaatcttcaccttacaagtcaatttttagggttgaccagttaagctgcacacaagcttcatgtacttaac |
10193352 |
T |
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| Q |
112 |
aagtcaatttttagttacatggtttttggtaagctatgtgtggtctacaccactgagggtgtacttaactaactgatcaagttagtggaataagcttagt |
211 |
Q |
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| T |
10193351 |
aagtcaatttttagttacatggcttttggtaagctatgtgtggtctacaccactgagggtgtacttaactaactgatcaagttagtggaataagcttagt |
10193252 |
T |
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| Q |
212 |
taatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt |
303 |
Q |
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| T |
10193251 |
taatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt |
10193160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 10192965 - 10192934
Alignment:
| Q |
302 |
gtaagccctactatgctttgaatggccaactt |
333 |
Q |
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| T |
10192965 |
gtaagccctactatgctttgaatggccaactt |
10192934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 19459752 - 19459820
Alignment:
| Q |
12 |
atgaactaaacagggcataggaagcttggacaatcttcaccttaaaagtcaatttttagggttgaccag |
80 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19459752 |
atgacctaaacagagcataggaagcttggacaatcttcaccttacaagtcaatttttagggttgaccag |
19459820 |
T |
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