View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_low_9 (Length: 317)
Name: NF3624_low_9
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 34021459 - 34021706
Alignment:
| Q |
16 |
aaattaataactgttgaattttgtgtaaccaattatgttcttaaattccatgaacaagaattaaggagcaatatatgatgatctttaaatttgttgatcg |
115 |
Q |
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| T |
34021459 |
aaattaataactgttgaattttatgtaaccaattatgtttttaaattccatgaacaagaattaaggagcaatataagatgatctttaaatttgttgatcg |
34021558 |
T |
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| Q |
116 |
agtggagtataatgttcgaaaagttattgatttgagtcccataccctaaacttttattaacnnnnnnntaacattagatctttattcccaacacttatat |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
34021559 |
agtggagtctaatgttcgaaaagttattgatttgagtcccataccctaaacttttattaacaaaaaaataacattatatctttattcccaacacttatat |
34021658 |
T |
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| Q |
216 |
gatctaagtatatatattcttgccttttgcatcaggcatggtggtgat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34021659 |
gatctaagtatatatattcttgccttttgcatcaggcatggtgatgat |
34021706 |
T |
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