View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3625_low_1 (Length: 781)
Name: NF3625_low_1
Description: NF3625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3625_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 59 - 678
Target Start/End: Original strand, 16533406 - 16534022
Alignment:
| Q |
59 |
tggattcaaagcatggtggcggcgctcaaattccgtgagtgctctaattatagtctaactaatgcggctgcatctcagctttgttctgaagtgtttcacc |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
16533406 |
tggattcaaagtatggtggcggcgctcaaattccgtgagtgctctaattatagtctaactaatgcagctgcatctcagatttgttctgaagtgtttcacc |
16533505 |
T |
|
| Q |
159 |
annnnnnnnnnnnaaacaactgattttattaatcaaaagctggcatcaaattgattgccataccaaccgaaatacaaggagtctcttcaatccaaacaaa |
258 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16533506 |
atttatttt----aaacacctgattttattaaccaaaagctggcatcaaattgattgccataccaaccgaaatacaaggagtctcttcaatccaaacaaa |
16533601 |
T |
|
| Q |
259 |
atcatattacgatgaaattgcaaatttggctaaataatgtgcgcttggtttgccacatgacgaacatgggaaa-ctcaaaagtattgaagctagagaaaa |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16533602 |
atcatattacgaagaaattgcaaatttggctaaataatgtgcgcttggtttgccacatgacgaacatgggaaaactcaaaagtattgaagctagagaaaa |
16533701 |
T |
|
| Q |
358 |
gctttttgcagtcttgagcaattgtccccaagtaaaagtgtttaggtcgagtctctttgagaacgtttatgacatttgaagaatccgattcaaccgtaag |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16533702 |
gctttttgcagtcttgagcaattgtccccaagtaaaagtgttgaggtcgagtctctttgagaacgtttatgacatttgaagaatccgattcaaccgtaag |
16533801 |
T |
|
| Q |
458 |
atttagaaagagcatgtccttagcaaaatctagccctttatacactgccttacactctgatatatcttattctaggatcaaggcatacaccaacaagcta |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16533802 |
atttagaaagagcatgtccttagcaaaatctagccctttatacactgccttacacgctgatatatcttattctgggatcaaggcatacaccaacaagccg |
16533901 |
T |
|
| Q |
558 |
cagcgacaacaatttcttctgagcctcggattacagcaaacaatcaccattttccgtcttcattaggacgtgcagcgtcaacattgagcttgtaacaaca |
657 |
Q |
| |
|
|||| ||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16533902 |
cagcaacaacaattccttttgaatctcggattacagaaaacaatccccattttccgtcttcattaggacgtgcagcgtcgacattgagcttgtaacaaca |
16534001 |
T |
|
| Q |
658 |
ttcaacagtggctgaccagtg |
678 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
16534002 |
tccaacagtggctgaccagtg |
16534022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16533407 - 16533348
Alignment:
| Q |
1 |
catcgtgtagtcacaattcgagcactcaccgaatttctgattcacatacgttttcaattg |
60 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16533407 |
catcgtttagtcacaattcgagcactcaccgaatttctgattcacatacgtttccaattg |
16533348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University