View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3625_low_3 (Length: 279)
Name: NF3625_low_3
Description: NF3625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3625_low_3 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 30229241 - 30229493
Alignment:
| Q |
17 |
attatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229241 |
attatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaact |
30229340 |
T |
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| Q |
117 |
tctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgtaacacttcaactagacactgagctaccaaaagcccaaggttgcaccatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229341 |
tctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgtaacacttcaactagacactgagctaccaaaagcccaaggttgcaccatg |
30229440 |
T |
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| Q |
217 |
atttatactatactagttgcaattattacagttgtatatagttggtgcctttg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229441 |
atttatactatactagttgcaattattacagttgtatatagttggtgcctttg |
30229493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 30049130 - 30049264
Alignment:
| Q |
17 |
attatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaact |
116 |
Q |
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||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
30049130 |
attatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaact |
30049229 |
T |
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| Q |
117 |
tctccaaagaatttgtccattatgctgtggtgtgt |
151 |
Q |
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| T |
30049230 |
tcttcattgaatttgtccattatggtgtggtgtgt |
30049264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 30063471 - 30063605
Alignment:
| Q |
17 |
attatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaact |
116 |
Q |
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||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
30063471 |
attatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaact |
30063570 |
T |
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| Q |
117 |
tctccaaagaatttgtccattatgctgtggtgtgt |
151 |
Q |
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| T |
30063571 |
tcttcattgaatttgtccattatggtgtggtgtgt |
30063605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 30219831 - 30219702
Alignment:
| Q |
20 |
atcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaacttct |
119 |
Q |
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||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30219831 |
atcaattggaatagctaattccagaaacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttgaacttct |
30219732 |
T |
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| Q |
120 |
ccaaagaatttgtccattatgctgtggtgt |
149 |
Q |
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| T |
30219731 |
tcattgaatttgtccattatgctgtggtgt |
30219702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 30033031 - 30033153
Alignment:
| Q |
18 |
ttatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaactt |
117 |
Q |
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|||||||||||||| || || |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30033031 |
ttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttgaactt |
30033130 |
T |
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| Q |
118 |
ctccaaagaatttgtccattatg |
140 |
Q |
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| T |
30033131 |
cttcatagaacttgtccattatg |
30033153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 13830 - 13769
Alignment:
| Q |
33 |
gctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatg |
94 |
Q |
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|||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||| |
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| T |
13830 |
gctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtccatg |
13769 |
T |
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