View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3625_low_6 (Length: 241)

Name: NF3625_low_6
Description: NF3625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3625_low_6
NF3625_low_6
[»] chr1 (12 HSPs)
chr1 (11-241)||(38137913-38138143)
chr1 (11-241)||(43044997-43045226)
chr1 (11-133)||(7891113-7891235)
chr1 (11-135)||(3300731-3300855)
chr1 (11-241)||(40034745-40034976)
chr1 (11-147)||(43083841-43083978)
chr1 (43-241)||(45983759-45983953)
chr1 (11-135)||(43066870-43066994)
chr1 (43-133)||(7888848-7888938)
chr1 (82-138)||(50912450-50912506)
chr1 (180-237)||(51291793-51291850)
chr1 (152-241)||(43045588-43045679)
[»] chr8 (5 HSPs)
chr8 (12-241)||(4297480-4297708)
chr8 (11-133)||(1846486-1846608)
chr8 (60-241)||(4619735-4619916)
chr8 (12-121)||(4787583-4787692)
chr8 (212-241)||(4787513-4787542)
[»] chr2 (6 HSPs)
chr2 (11-192)||(34690843-34691023)
chr2 (11-192)||(34713255-34713435)
chr2 (11-183)||(16232184-16232355)
chr2 (211-241)||(34691029-34691059)
chr2 (211-241)||(34713441-34713471)
chr2 (11-52)||(33860838-33860879)
[»] chr4 (1 HSPs)
chr4 (11-135)||(4231462-4231586)
[»] chr5 (1 HSPs)
chr5 (189-241)||(16349319-16349371)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 38138143 - 38137913
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38138143 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 38138044  T
Q  111 tttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38138043 tttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatg 38137944  T
Q  211 aaaatataaataccttgttgcagcagcagat 241  Q
    |||||||||||||||||||||||||||||||    
T  38137943 aaaatataaataccttgttgcagcagcagat 38137913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 43044997 - 43045226
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |   ||||| ||| ||||| ||||||||||||||| ||||| ||| ||||||||||    
T  43044997 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43045096  T
Q  111 tttgggtgtagtggcatccatctgt-caatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaa--atacaacttcaaacagg 207  Q
     ||||||||||| |||||||||||| ||| |||||| |||   |||||||||||| | ||||||| |||||||| ||| ||  |||||||||| ||  ||    
T  43045097 cttgggtgtagtagcatccatctgttcaagatagat-gca---aattagtacttaaataaatgaattataaaaataatcaaatatacaacttc-aagggg 43045191  T
Q  208 atgaaaata-taaataccttgttgcagcagcagat 241  Q
     |||||||| |||||||||||||||| ||||||||    
T  43045192 ctgaaaatattaaataccttgttgcaacagcagat 43045226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 7891235 - 7891113
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||| || | ||| ||||||| | |||||||||||||||| ||| ||||||||||||||| ||   ||||||||| |||||||||||||||||||||    
T  7891235 cagagatagggataaaaggaattttacctaggttatagccaacctcactcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagta 7891136  T
Q  111 tttgggtgtagtggcatccatct 133  Q
    |||||||||||||||||||||||    
T  7891135 tttgggtgtagtggcatccatct 7891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 3300731 - 3300855
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |   ||||| ||| ||||| ||||||||||||||||||||||||| |||| |||||    
T  3300731 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 3300830  T
Q  111 tttgggtgtagtggcatccatctgt 135  Q
     || |||||||||||||||||||||    
T  3300831 cttaggtgtagtggcatccatctgt 3300855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 40034976 - 40034745
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    |||| ||||||| ||||||||| |||  ||||||||||||||| |  ||||||| ||| || || | | |||||| ||||||| ||||| |||| |||||    
T  40034976 cagatatgggaataaatggaatgtcagataggttatagccaaccttgatcaaaaggggggagaaattcgtcacaagttcttcaaacctacccttagagta 40034877  T
Q  111 tttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtactt-atacaaatgaa----atataaaaacaatgaaatacaacttcaaaca 205  Q
    |||||||||||| ||||||||||||||| ||||||     | ||||||||||| ||| |||||||    | ||||||| ||  ||||||||||| |||      
T  40034876 tttgggtgtagttgcatccatctgtcaagatagat----gataattagtacttaatataaatgaactataaataaaaataaacaaatacaactttaaagg 40034781  T
Q  206 ggatgaaaatataaataccttgttgcagcagcagat 241  Q
    || || ||||||||||||||||||||||||||||||    
T  40034780 ggctggaaatataaataccttgttgcagcagcagat 40034745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 43083841 - 43083978
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |   ||||| ||| ||||| ||||||||||||||| ||||| ||| ||||||||||    
T  43083841 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43083940  T
Q  111 tttgggtgtagtggcatccatctg-tcaatatagatag 147  Q
     ||||||||||| ||||||||||| |||| ||||||||    
T  43083941 cttgggtgtagtagcatccatctgttcaagatagatag 43083978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 45983953 - 45983759
Alignment:
Q  43 ttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtatttgggtgtagtggcatccatctgtcaatata 142  Q
    ||||||||||| | | ||||| ||||| ||| || | ||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||    ||    
T  45983953 ttatagccaaccttattcaaacagggtaaaacttgcctcacaatttctacatacctatccctagagtatttaggtgtagtggcatccatctgtcggggta 45983854  T
Q  143 gatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagat 241  Q
    |||     | |||||||||||||| ||||||| |||||||| ||| ||||||||  | |||  ||  ||||||||||||||||||||||||||||||||    
T  45983853 gat----gataattagtacttatataaatgaattataaaaataatcaaatacaatcttaaaggggcggaaaatataaataccttgttgcagcagcagat 45983759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 43066994 - 43066870
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |   ||||| ||| ||||| ||||||||||||||| ||||| ||| ||||||||||    
T  43066994 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43066895  T
Q  111 tttgggtgtagtggcatccatctgt 135  Q
     ||||||||||| ||||||||||||    
T  43066894 cttgggtgtagtagcatccatctgt 43066870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 7888938 - 7888848
Alignment:
Q  43 ttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtatttgggtgtagtggcatccatct 133  Q
    ||||||||||| ||  ||||||||||||||| ||  |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  7888938 ttatagccaacctctctcaaaaagggtgaaacttgattcacaatttcttcatacctgtcctaggagtatatgggtgtagtggcatccatct 7888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 50912450 - 50912506
Alignment:
Q  82 acaatttcttcatacctatccttggagtatttgggtgtagtggcatccatctgtcaa 138  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  50912450 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaa 50912506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 51291793 - 51291850
Alignment:
Q  180 aaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagc 237  Q
    |||| ||| ||||||||||| |||  || |||||||||||||||||||||||||||||    
T  51291793 aaaagaatcaaatacaactttaaaagggctgaaaatataaataccttgttgcagcagc 51291850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 43045588 - 43045679
Alignment:
Q  152 caattagtacttatacaaatgaaatataaaaacaatgaa--atacaacttcaaacaggatgaaaata-taaataccttgttgcagcagcagat 241  Q
    ||||||||||||| | ||||||| |||||||| ||| ||  |||||||||| ||  || |||||||| |||||||||||||||| ||||||||    
T  43045588 caattagtacttaaataaatgaattataaaaataatcaaatatacaacttc-aaggggctgaaaatattaaataccttgttgcaacagcagat 43045679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 4297480 - 4297708
Alignment:
Q  12 agagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtat 111  Q
    ||||||||||| |||||||||||||| | | ||||||||||| |  |||||| ||| | ||| || ||     |||| | ||||||||||| ||||||||    
T  4297480 agagatgggaataaatggaatttcatatggcttatagccaaccttgatcaaataggttaaaacttgctctgatatttttacatacctatccatggagtat 4297579  T
Q  112 ttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatga 211  Q
    |||||||||||||||||||||||| || |||||| |   | |||||||| ||||||||||||| |||||||| ||| ||||||||  | |||| || | |    
T  4297580 ttgggtgtagtggcatccatctgtgaagatagat-gatgataattagtatttatacaaatgaattataaaaataatcaaatacaatcttaaacgggctaa 4297678  T
Q  212 aaatataaataccttgttgcagcagcagat 241  Q
    ||||| ||||||||||||||||||||||||    
T  4297679 aaatacaaataccttgttgcagcagcagat 4297708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 1846486 - 1846608
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    ||||||| || | ||| ||||||| | || ||||||||||||| ||  ||||||||||||||| ||   ||||||||| |||||||||||||||||||||    
T  1846486 cagagatagggataaaaggaattttacctgggttatagccaacctcgctcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagta 1846585  T
Q  111 tttgggtgtagtggcatccatct 133  Q
    |||||||||||||||||||||||    
T  1846586 tttgggtgtagtggcatccatct 1846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 4619735 - 4619916
Alignment:
Q  60 caaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtatttgggtgtagtggcatccatctgtcaatatagatagcacacaattagt 159  Q
    ||||||| |||||||  | ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||     | |||||||    
T  4619735 caaaaagtgtgaaaaacctttcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagat----gaaaattagt 4619830  T
Q  160 acttatacaaatgaaatataaaaacaa----tgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagat 241  Q
    | ||||| |||||||  ||||||| ||    | |||||||||||  ||  || |||||||||||||||||||||| ||||||||||    
T  4619831 aattatataaatgaataataaaaataataattaaaatacaactttgaaggggctgaaaatataaataccttgttgtagcagcagat 4619916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 4787692 - 4787583
Alignment:
Q  12 agagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtat 111  Q
    |||||||||||||||||||||||||| | ||||||||||||| |  |||||||| ||| ||| || ||||   ||||||  ||||||| || ||||||||    
T  4787692 agagatgggaacaaatggaatttcatttgggttatagccaaccttgatcaaaaatggtaaaacttgcttcgatatttctaaatacctaaccgtggagtat 4787593  T
Q  112 ttgggtgtag 121  Q
    ||||||||||    
T  4787592 ttgggtgtag 4787583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 4787542 - 4787513
Alignment:
Q  212 aaatataaataccttgttgcagcagcagat 241  Q
    ||||||||||||||||||||||||||||||    
T  4787542 aaatataaataccttgttgcagcagcagat 4787513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 34690843 - 34691023
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagt 109  Q
    |||||||||||||||||||||||| ||||  |||||| |||| | ||| |||||  |||||||| | |||||||||||  ||||||||||||||||||||    
T  34690843 cagagatgggaacaaatggaattttatctgtgttataaccaatcctca-tcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagt 34690941  T
Q  110 atttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaat 192  Q
    ||||||||||| |||||||||||||  || |||||| |   | ||||| |||||||| ||||||| |||||||| ||| ||||    
T  34690942 atttgggtgtaatggcatccatctgcgaagatagat-gttaataattaatacttatataaatgaattataaaaataatcaaat 34691023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 34713255 - 34713435
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagt 109  Q
    |||||||||||||||||||||||| ||||  |||||| |||| | ||| |||||  |||||||| | |||||||||||  ||||||||||||||||||||    
T  34713255 cagagatgggaacaaatggaattttatctgtgttataaccaatcctca-tcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagt 34713353  T
Q  110 atttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaat 192  Q
    ||||||||||| |||||||||||||  || |||||| |   | ||||| |||||||| ||||||| |||||||| ||| ||||    
T  34713354 atttgggtgtaatggcatccatctgcgaagatagat-gttaataattaatacttatataaatgaattataaaaataatcaaat 34713435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 16232184 - 16232355
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagt 109  Q
    |||||||||||||||||||||| |||||   |||||| |||| | ||  |||||  |||||||| | ||||||||||| ||||||| || ||||||||||    
T  16232184 cagagatgggaacaaatggaatatcatcagcgttataaccaatcctcg-tcaaagcgggtgaaactcccttcacaattacttcatatctgtccttggagt 16232282  T
Q  110 atttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaa 183  Q
    |||| ||||||||||||| ||||||| || |||||| |   | ||||| |||||||| ||||||| ||||||||    
T  16232283 atttcggtgtagtggcattcatctgtgaagatagat-gttaataattattacttatataaatgaattataaaaa 16232355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 34691029 - 34691059
Alignment:
Q  211 aaaatataaataccttgttgcagcagcagat 241  Q
    |||||||||||||||||||||||||||||||    
T  34691029 aaaatataaataccttgttgcagcagcagat 34691059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 34713441 - 34713471
Alignment:
Q  211 aaaatataaataccttgttgcagcagcagat 241  Q
    |||||||||||||||||||||||||||||||    
T  34713441 aaaatataaataccttgttgcagcagcagat 34713471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 33860838 - 33860879
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaa 52  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  33860838 cagagatgggaacaaatggaactttgtctaggttatagccaa 33860879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 4231462 - 4231586
Alignment:
Q  11 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 110  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |   |||   ||| ||| | ||||||||||||||| ||||||||   |||||||||    
T  4231462 cagagatgggaacaaatggaattttatctgggttatagccaaccttcttcatgtaggatgatacttccttcacaatttcatcatacctgctcttggagta 4231561  T
Q  111 tttgggtgtagtggcatccatctgt 135  Q
     ||||| |||||||| |||||||||    
T  4231562 cttgggagtagtggcgtccatctgt 4231586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 16349319 - 16349371
Alignment:
Q  189 aaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagat 241  Q
    ||||||||||| |||   | ||||||||| |||||||||||||||||||||||    
T  16349319 aaatacaactttaaaagagctgaaaatatgaataccttgttgcagcagcagat 16349371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University