View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3625_low_7 (Length: 214)
Name: NF3625_low_7
Description: NF3625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3625_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 24637209 - 24637026
Alignment:
| Q |
16 |
aattgaaccaattgagtgattcattttttggggtcccttttatctgtttctcggtttaataattcacaaattggattcctaagctttgtaagaaaaataa |
115 |
Q |
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| T |
24637209 |
aattgaaccaattgagtgattcattttttggggtcccttttatctgtttctcagtttaatgattcacaaattggattcctaagctttgtaagaaaaataa |
24637110 |
T |
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| Q |
116 |
acatgattttttaatttctaaataaaattagttttttggtcatgtttaaattatatggattccccgaaaaagaagtgatctgtg |
199 |
Q |
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| T |
24637109 |
acatgattttttaatttctaaataaaattagttttttggtcatgtttaaattatatggattccccgaaaaagaagtgatctgtg |
24637026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 24715669 - 24715589
Alignment:
| Q |
100 |
tttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttt-tggtcatgtttaaattatatggattccc |
179 |
Q |
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| T |
24715669 |
tttgtgagaaaaagaaacatgatttttcaatttcgaaatgaaattagtttttattgtcaagtttaaattatatggattccc |
24715589 |
T |
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