View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3626_high_10 (Length: 495)
Name: NF3626_high_10
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 3307682 - 3307214
Alignment:
| Q |
17 |
atatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccaactccaaaaatttgcatctaatatggttcaaaatgatccat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307682 |
atatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccagctccaaaaatttgcatctaatatggttcaaaatgatccat |
3307583 |
T |
|
| Q |
117 |
tcatgcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattgaactcataacttgaaccttgcactttgtgttatt |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
3307582 |
tcattcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattaaactcataacttgaaccttgcactctgtgttatt |
3307483 |
T |
|
| Q |
217 |
tctaagtgaacgagtccaccttctttcaactccaaagtctcannnnnnnnncttggacacatgtgataagagcatctacataccatgacctaactcattt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307482 |
tctaagtgaacgagtccaccttctttcaactccaaagtctctattttttttcctggacacatgtgataagagcatctacataccatgacctaactcattt |
3307383 |
T |
|
| Q |
317 |
ttggtttcccaacttgtcaccaccactacccgcactctcataatcctcctccgaggtaatctcatcttgaacggaatccttttttcccctttcttgtgac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307382 |
ttggtttcccaacttgtcaccaccactacccacactctcataatcctcctccgaggcaatctcatcttgaacggaatccttttttcccctttcttgtgac |
3307283 |
T |
|
| Q |
417 |
aattattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctttg |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307282 |
aattattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctttg |
3307214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 465
Target Start/End: Complemental strand, 16549635 - 16549593
Alignment:
| Q |
423 |
tcttgaagttattggtcttgtgacaattgaagcatttatactt |
465 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
16549635 |
tcttgaagtgattggtcttgtgacaattgaagcatttgtactt |
16549593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University