View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3626_high_15 (Length: 433)

Name: NF3626_high_15
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3626_high_15
NF3626_high_15
[»] chr4 (16 HSPs)
chr4 (11-417)||(22226750-22227148)
chr4 (227-327)||(31012546-31012650)
chr4 (240-329)||(9088124-9088217)
chr4 (225-309)||(31031435-31031527)
chr4 (276-326)||(5579780-5579830)
chr4 (267-329)||(9290167-9290229)
chr4 (267-326)||(17056012-17056071)
chr4 (219-327)||(53718260-53718372)
chr4 (230-310)||(50116317-50116396)
chr4 (270-304)||(53963384-53963418)
chr4 (266-327)||(13843162-13843223)
chr4 (249-326)||(25104706-25104784)
chr4 (286-333)||(21505261-21505308)
chr4 (267-321)||(28184371-28184425)
chr4 (274-304)||(45652127-45652157)
chr4 (227-299)||(35298173-35298243)
[»] chr5 (7 HSPs)
chr5 (268-329)||(11404675-11404736)
chr5 (240-311)||(14502697-14502772)
chr5 (222-326)||(2684827-2684935)
chr5 (269-318)||(38844062-38844111)
chr5 (267-327)||(34768918-34768978)
chr5 (270-299)||(35621139-35621168)
chr5 (274-326)||(3954416-3954468)
[»] chr8 (6 HSPs)
chr8 (267-329)||(3053363-3053425)
chr8 (240-329)||(26457077-26457168)
chr8 (272-329)||(32578251-32578308)
chr8 (269-326)||(2655235-2655292)
chr8 (227-322)||(32943491-32943590)
chr8 (275-304)||(5501407-5501436)
[»] chr6 (4 HSPs)
chr6 (229-326)||(24619315-24619415)
chr6 (227-327)||(1350475-1350577)
chr6 (227-311)||(29956558-29956639)
chr6 (249-329)||(8438935-8439019)
[»] chr7 (6 HSPs)
chr7 (268-328)||(45630195-45630255)
chr7 (249-329)||(44397433-44397517)
chr7 (270-328)||(5968376-5968434)
chr7 (267-307)||(30785494-30785534)
chr7 (267-304)||(5254985-5255022)
chr7 (247-311)||(4036225-4036289)
[»] chr1 (5 HSPs)
chr1 (267-321)||(48217304-48217358)
chr1 (240-307)||(44058235-44058304)
chr1 (270-304)||(49208252-49208286)
chr1 (270-328)||(24214075-24214133)
chr1 (267-323)||(25724238-25724294)
[»] chr3 (5 HSPs)
chr3 (239-304)||(47896465-47896532)
chr3 (267-326)||(51818416-51818475)
chr3 (328-390)||(47895833-47895895)
chr3 (270-311)||(19279658-19279699)
chr3 (271-328)||(48923474-48923531)
[»] chr2 (7 HSPs)
chr2 (249-388)||(13601277-13601410)
chr2 (249-327)||(32886560-32886640)
chr2 (229-309)||(26911233-26911315)
chr2 (270-304)||(38611346-38611380)
chr2 (280-326)||(44985574-44985620)
chr2 (281-311)||(22358908-22358938)
chr2 (272-308)||(43449629-43449665)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 22226750 - 22227148
Alignment:
Q  11 cagagagggcttacagaagtacttagattatttttaacaatttgtcttt-aactaaaatttagcaatcacttgatgaatgcaattttgtagtcataaaaa 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22226750 cagagagagcttacagaagtacttagattatttttaacaatttgtcttttaactaaaatttgtcaatcacttgatgaatgcaattttgtagtcataaaaa 22226849  T
Q  110 tggttgttttataacacataacttataaatggatatcccttaaacaaaaaacataattagggacatatagtcgagttttaatttaaaagaaaaaataaac 209  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||    |||||||||||||||||||    
T  22226850 tggttgttttataacacataacttataattggacatcccttaaacaaaaaacataattagggagatatagtcgagtt----tttaaaagaaaaaataaac 22226945  T
Q  210 agacataggaacaagatatacttagttgaacacaaccctaaatcaaaagtatttaggcacac--ataaatgataaaatttaaaagagaaataatttagtc 307  Q
    ||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22226946 agacatagagataagaaatacttagttgaacacaaccctaaatcaaaagtatttaggcacacatataaatgataaaatttaaaagagaaataatttagtc 22227045  T
Q  308 acataaattaatatcatttctcatttctcatttatattttatcaatcaaatgtgtattcaaataaattttatctagggttgtgcaaactttcttcataga 407  Q
    |||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22227046 acataaattaata-------tcatttctcatttatattttatcaatcaagtgtgtattcaaataaattttatctagggttgtgcaaacttacttcataga 22227138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 31012546 - 31012650
Alignment:
Q  227 atacttagttgaacacaaccctaaatcaaaagtatttaggca----cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatc 322  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    |||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||    
T  31012546 atacttagttggacacaaccccaaatcaaaagtatttgggcaaacacacatatatggtaaaacttaaaagagaaataatttagtcacatcatttaatatc 31012645  T
Q  323 atttc 327  Q
    |||||    
T  31012646 atttc 31012650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 9088217 - 9088124
Alignment:
Q  240 cacaaccctaaatcaaaagtatttaggcacacata----aatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    |||||||| ||||||||||||||||| ||||| ||    ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  9088217 cacaaccccaaatcaaaagtatttagacacacttacttgaatgataaaatttaaaagagaaatagtttagtcacattacttaatatcatttctc 9088124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 31031435 - 31031527
Alignment:
Q  225 atatacttagttgaacacaaccctaaatcaaaagtatttaggcaca--------cataaatgataaaatttaaaagagaaataatttagtcac 309  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||        ||||| || ||||||||| ||||||||||||||||||||    
T  31031435 atatacttagttggacacaaccccaaatcaaaagtatttaggcacatacacatgcataagtggtaaaatttagaagagaaataatttagtcac 31031527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 5579780 - 5579830
Alignment:
Q  276 atgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5579780 atgataaaatttaaaagagaaataatttagtcacatcatttaatatcattt 5579830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 9290167 - 9290229
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    |||||||||||||||||| |||||||||||||||| |||||| || | |||||||||||||||    
T  9290167 cacacataaatgataaaacttaaaagagaaataatgtagtcatattatttaatatcatttctc 9290229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 17056071 - 17056012
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||  | ||||||||||||    
T  17056071 cacacataaatgataaaatttaaaagaaaaataatttagtctcaacacttaatatcattt 17056012  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 53718372 - 53718260
Alignment:
Q  219 aacaagatatacttagttgaacacaaccctaaatcaaaagtatttag----gcacacataaatgataaaatttaaaagagaaataatttagtcacataaa 314  Q
    ||||||| ||||||||  || ||||||   ||||||||||||||| |    ||| ||||||| | ||||||||||||||||||||||||| |||||| |     
T  53718372 aacaagaaatacttagccgagcacaacttcaaatcaaaagtatttggatatgcatacataaacggtaaaatttaaaagagaaataatttaatcacatcac 53718273  T
Q  315 ttaatatcatttc 327  Q
    |||||||||||||    
T  53718272 ttaatatcatttc 53718260  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 50116396 - 50116317
Alignment:
Q  230 cttagttgaacacaaccctaaatcaaaagtatttaggcacacataaatgataaaatttaaaagagaaataatttagtcaca 310  Q
    |||||||| ||||||| | ||||||| |  |||| | |||||| ||||||||||||||||||||||||||||||| |||||    
T  50116396 cttagttggacacaactccaaatcaataa-atttggacacacaaaaatgataaaatttaaaagagaaataatttaatcaca 50116317  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 53963418 - 53963384
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataattta 304  Q
    |||||||||||||||||||||||||||||||||||    
T  53963418 acataaatgataaaatttaaaagagaaataattta 53963384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 13843223 - 13843162
Alignment:
Q  266 gcacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttc 327  Q
    ||||| ||||||||||||||||||||||||||||||   ||||||| | ||||||| |||||    
T  13843223 gcacatataaatgataaaatttaaaagagaaataataatgtcacatcatttaatattatttc 13843162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 25104784 - 25104706
Alignment:
Q  249 aaatcaaaagtatttaggca--cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    |||||||||||||||| | |  ||||| |||||||||||| ||||||||||||||||||||| || | ||||||| ||||    
T  25104784 aaatcaaaagtatttaagtatacacatgaatgataaaatt-aaaagagaaataatttagtcatattatttaatattattt 25104706  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 21505261 - 21505308
Alignment:
Q  286 ttaaaagagaaataatttagtcacataaattaatatcatttctcattt 333  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||||    
T  21505261 ttaaaagagaaataatttagtcagatcacttaatatcatttatcattt 21505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 28184425 - 28184371
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatat 321  Q
    |||||| |||||||||||||||||||| ||||||| || |||||| | |||||||    
T  28184425 cacacaaaaatgataaaatttaaaagaaaaataatataatcacatcagttaatat 28184371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 304
Target Start/End: Complemental strand, 45652157 - 45652127
Alignment:
Q  274 aaatgataaaatttaaaagagaaataattta 304  Q
    |||||||||||||||||||||||||||||||    
T  45652157 aaatgataaaatttaaaagagaaataattta 45652127  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 35298173 - 35298243
Alignment:
Q  227 atacttagttgaacacaaccctaaatcaaaagtatttaggcacacataaatgataaaatttaaaagagaaata 299  Q
    |||||| ||||  ||||| || |||||||||||||||||  |||||| |||| |||||||||||||| |||||    
T  35298173 atacttggttgggcacaatccaaaatcaaaagtatttag--acacatgaatggtaaaatttaaaagaaaaata 35298243  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 11404736 - 11404675
Alignment:
Q  268 acacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  11404736 acacatagatgataaaatttaaaagagaaataatttagtcacatcagttaatatcatttctc 11404675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 14502697 - 14502772
Alignment:
Q  240 cacaaccctaaatcaaaagtatttaggcacaca----taaatgataaaatttaaaagagaaataatttagtcacat 311  Q
    |||||||  ||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||    
T  14502697 cacaacctcaaatcaaaagtatttaggcgcacacacgtaaatgataaaatttaaaagagaaataatttagtcacat 14502772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 2684827 - 2684935
Alignment:
Q  222 aagatatacttagttgaacacaaccctaaatcaaaagtatttagg----cacacataaatgataaaatttaaaagagaaataatttagtcacataaatta 317  Q
    |||| ||| |||||||  ||||| ||||||||||||||||||||     ||||||| |||||||| ||||||||||||||||||| ||||| || | ||     
T  2684827 aagaaatatttagttgggcacaatcctaaatcaaaagtatttagataaacacacatgaatgataatatttaaaagagaaataattaagtcaaatcacttg 2684926  T
Q  318 atatcattt 326  Q
    |||||||||    
T  2684927 atatcattt 2684935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 38844111 - 38844062
Alignment:
Q  269 cacataaatgataaaatttaaaagagaaataatttagtcacataaattaa 318  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  38844111 cacataagtgataaaatttaaaagataaataatttagtcacatcaattaa 38844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 34768918 - 34768978
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttc 327  Q
    ||||||||||| |||||||||||||||  ||||||  |||||||| | |||||||||||||    
T  34768918 cacacataaataataaaatttaaaagatgaataataaagtcacatcacttaatatcatttc 34768978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 35621168 - 35621139
Alignment:
Q  270 acataaatgataaaatttaaaagagaaata 299  Q
    ||||||||||||||||||||||||||||||    
T  35621168 acataaatgataaaatttaaaagagaaata 35621139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 3954416 - 3954468
Alignment:
Q  274 aaatgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    |||||||||||||||||||| || ||||||||||| || | ||||||| ||||    
T  3954416 aaatgataaaatttaaaagaaaagtaatttagtcatatcacttaatattattt 3954468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 3053363 - 3053425
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||  |||||||    
T  3053363 cacacataaatgataaaatttaaaagagaaataatttagtcacatcacttaataaaatttctc 3053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 26457077 - 26457168
Alignment:
Q  240 cacaaccctaaatcaaaagtatttaggcaca--cataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    |||||||| |||||||||| |||| | ||||  ||||||| |||||||||||||||||||||||||||| |||| | || |||| |||||||    
T  26457077 cacaaccccaaatcaaaagcatttggacacatacataaataataaaatttaaaagagaaataatttagttacatcacttgatattatttctc 26457168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 32578308 - 32578251
Alignment:
Q  272 ataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    |||||||||||||||||||||| |||||||||| ||| |||| || ||||||||||||    
T  32578308 ataaatgataaaatttaaaagaaaaataatttaatcatataacttgatatcatttctc 32578251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 2655292 - 2655235
Alignment:
Q  269 cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    |||||||||| |||||||||||||| ||||| |||| |||||| | ||||||||||||    
T  2655292 cacataaatggtaaaatttaaaagaaaaatattttaatcacatcacttaatatcattt 2655235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 32943491 - 32943590
Alignment:
Q  227 atacttagttgaacacaaccctaaatcaaaagtatttag----gcacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatc 322  Q
    |||||| |||| ||||||||  ||||||||||||||| |     ||||||||||| |||||||||||| || |||||||| ||||| || | ||||||||    
T  32943491 atacttggttggacacaaccacaaatcaaaagtatttggacgcacacacataaataataaaatttaaatgaaaaataattaagtcatatcacttaatatc 32943590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 5501436 - 5501407
Alignment:
Q  275 aatgataaaatttaaaagagaaataattta 304  Q
    ||||||||||||||||||||||||||||||    
T  5501436 aatgataaaatttaaaagagaaataattta 5501407  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 24619315 - 24619415
Alignment:
Q  229 acttagttgaacacaaccctaaatcaaaag-tatttaggca--cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatt 325  Q
    ||||||||| |||||| ||||||| ||||  |||||||| |  ||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  24619315 acttagttggacacaatcctaaattaaaaaatatttaggaatacacatgaatgataaaatttaaaagagaaataatttagttacatcacttaatatcatt 24619414  T
Q  326 t 326  Q
    |    
T  24619415 t 24619415  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 1350475 - 1350577
Alignment:
Q  227 atacttagttgaacacaaccctaaatcaaaagtatttaggcac--acataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcat 324  Q
    ||||||| ||| ||| ||||||||||||||||||||||| |||  ||||||||||||||||||||| |||| |||||| | ||| || | |||||||| |    
T  1350475 atacttaattggacataaccctaaatcaaaagtatttagacacatacataaatgataaaatttaaatgagatataattaaatcatatcacttaatatcgt 1350574  T
Q  325 ttc 327  Q
    |||    
T  1350575 ttc 1350577  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 29956639 - 29956558
Alignment:
Q  227 atacttagttgaacacaaccctaaatcaaaagtatttaggcacacataaatgataaaatttaaaagagaaataatttagtcacat 311  Q
    |||||| |||| ||||||| |||||||||||||||||||  |||||||   |||||||||||||||| ||| |||||||||||||    
T  29956639 atactttgttggacacaacactaaatcaaaagtatttagatacacata---gataaaatttaaaagaaaaacaatttagtcacat 29956558  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 8439019 - 8438935
Alignment:
Q  249 aaatcaaaagtatttaggca----cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    ||||||||||||||||| ||    ||||| |||||||||| ||||||||||||||||||| |||||| | |||||||||| ||||    
T  8439019 aaatcaaaagtatttagacatgttcacatgaatgataaaaattaaaagagaaataatttaatcacatcacttaatatcatctctc 8438935  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 45630195 - 45630255
Alignment:
Q  268 acacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttct 328  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  45630195 acacataaatgataaaatttataagagaaataatttagtctcataatttaatataatttct 45630255  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 44397517 - 44397433
Alignment:
Q  249 aaatcaaaagtatttaggca----cacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctc 329  Q
    ||||||||||||||||| ||    ||| | ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  44397517 aaatcaaaagtatttagacatactcacttgaatgataaaatttaaaagagaaataatttagtcacatcacttaatatgatttctc 44397433  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 5968376 - 5968434
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttct 328  Q
    |||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||    
T  5968376 acatgaatgataaaatttaaaagagaaataatttaatcacattacttaatatcatttct 5968434  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 30785494 - 30785534
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtc 307  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  30785494 cacacataaatgataaaatttaaaagaaaaataatttagtc 30785534  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 5255022 - 5254985
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataattta 304  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  5255022 cacacataaatgtaaaaatttaaaagagaaataattta 5254985  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 4036225 - 4036289
Alignment:
Q  247 ctaaatcaaaagtatttaggcacacataaatgataaaatttaaaagagaaataatttagtcacat 311  Q
    ||||||||| ||||||| | |||| || ||| |||||||||||||  ||||||||||| ||||||    
T  4036225 ctaaatcaatagtatttggacacatatgaattataaaatttaaaaaggaaataatttaatcacat 4036289  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 48217358 - 48217304
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatat 321  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| |||||||    
T  48217358 cacacataaatgataaaatttataagagaaataatttagtctcataatttaatat 48217304  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 44058304 - 44058235
Alignment:
Q  240 cacaaccctaaatcaaaagtatttaggc--acacataaatgataaaatttaaaagagaaataatttagtc 307  Q
    |||||| | |||||||||||||||||||  |||||| ||| |||||||||||||| ||||||||||||||    
T  44058304 cacaactccaaatcaaaagtatttaggcgcacacattaataataaaatttaaaagggaaataatttagtc 44058235  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 49208252 - 49208286
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataattta 304  Q
    |||||||||||||||||||||||||||||||||||    
T  49208252 acataaatgataaaatttaaaagagaaataattta 49208286  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 24214075 - 24214133
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttct 328  Q
    |||| ||| |||| |||||||| | ||||||||||||||||| | ||||||||||||||    
T  24214075 acatgaatcataacatttaaaaaaaaaataatttagtcacatcacttaatatcatttct 24214133  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 25724294 - 25724238
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatca 323  Q
    ||||||||||| | |||| |||||||| ||||||  ||||||||| |||||||||||    
T  25724294 cacacataaatcaaaaaaattaaaagataaataaaatagtcacatcaattaatatca 25724238  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 47896532 - 47896465
Alignment:
Q  239 acacaaccctaaatcaaaagtatttaggcacac--ataaatgataaaatttaaaagagaaataattta 304  Q
    ||||||| |||||| ||||||||| ||||||||  || ||||||||||||||||||||||||||||||    
T  47896532 acacaactctaaataaaaagtattaaggcacaccaatgaatgataaaatttaaaagagaaataattta 47896465  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 51818416 - 51818475
Alignment:
Q  267 cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| | ||||||| ||||    
T  51818416 cacacataaatgataaaatttaaaagaaaaataatttaatcacatcacttaatattattt 51818475  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 47895895 - 47895833
Alignment:
Q  328 tcatttctcatttatattttatcaatcaaatgtgtattcaaataaattttatctagggttgtg 390  Q
    ||||||||| |||| |||||||||||||  ||||| |||||||||||||||| ||||||||||    
T  47895895 tcatttctcttttaaattttatcaatcatgtgtgtgttcaaataaattttatttagggttgtg 47895833  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 19279658 - 19279699
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataatttagtcacat 311  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  19279658 acataaatgattaaatttaaaagagaaataatttaatcacat 19279699  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 48923531 - 48923474
Alignment:
Q  271 cataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttct 328  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||| | ||||||    
T  48923531 cataaatgataaaatataaaagagaaataatttactcacatcatttaatttaatttct 48923474  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 13601277 - 13601410
Alignment:
Q  249 aaatcaaaagtatttagg--cacacataaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctcatttctcatttatattt 346  Q
    |||| ||||||||||| |  ||||||| ||||||||||||||||| |||||||||||| |||||| |  |||||||||||        || |||| ||||    
T  13601277 aaataaaaagtatttaagtacacacatgaatgataaaatttaaaaaagaaataatttactcacatcacctaatatcattt--------tcttttaaattt 13601368  T
Q  347 tatcaatcaaatgtgtattcaaataaattttatctagggttg 388  Q
    ||||| |||  ||||| | |||||||||||||| ||||||||    
T  13601369 tatcagtcatgtgtgtgtccaaataaattttatttagggttg 13601410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 32886640 - 32886560
Alignment:
Q  249 aaatcaaaagtatttaggcacacata--aatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttc 327  Q
    ||||||||||||||| | |||||| |  |||||||||||||||| |||||||| || |||||||| | |||||||||||||    
T  32886640 aaatcaaaagtatttggacacacacacaaatgataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttc 32886560  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 26911315 - 26911233
Alignment:
Q  229 acttagttgaacacaaccctaaatcaaaagtatttaggcacaca--taaatgataaaatttaaaagagaaataatttagtcac 309  Q
    |||||||| |||| || | |||||||||||||||| | ||||||  ||||| ||||||||||||||| |||||||| ||||||    
T  26911315 acttagttaaacataaacttaaatcaaaagtattttgacacacacataaataataaaatttaaaagataaataattaagtcac 26911233  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 38611380 - 38611346
Alignment:
Q  270 acataaatgataaaatttaaaagagaaataattta 304  Q
    |||||||||||||||||||||||||||||||||||    
T  38611380 acataaatgataaaatttaaaagagaaataattta 38611346  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 44985620 - 44985574
Alignment:
Q  280 taaaatttaaaagagaaataatttagtcacataaattaatatcattt 326  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||    
T  44985620 taaaatttaaaagaaaaataatttagtcacatcagttaatatcattt 44985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 22358908 - 22358938
Alignment:
Q  281 aaaatttaaaagagaaataatttagtcacat 311  Q
    |||||||||||||||||||||||||||||||    
T  22358908 aaaatttaaaagagaaataatttagtcacat 22358938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 43449665 - 43449629
Alignment:
Q  272 ataaatgataaaatttaaaagagaaataatttagtca 308  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43449665 ataaataataaaatttaaaatagaaataatttagtca 43449629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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