View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_16 (Length: 432)
Name: NF3626_high_16
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 12266053 - 12265640
Alignment:
| Q |
16 |
cacatgttacaagacactctgcacgacaagcaaaacgctctatagcacaactttcatcaactatttttgattgagtggtgtcacatagttgaactacaac |
115 |
Q |
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| T |
12266053 |
cacatgttataagacactctgcacgacaagcaaaacgctctatagcacaactttcatcaactatttttgattgagtagtgtcacatagttgaactacaac |
12265954 |
T |
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| Q |
116 |
tagcataataataataatcatgaacatgatcacaagaactttcttcagctcaatcattgccatatttcttcaatctatagtaacttaagaagatttgtga |
215 |
Q |
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| T |
12265953 |
tagcataataataat---catgaacatgatcacaagaactttcttcagctcaatcattgccatatttcttcaatctatagtaacttaagaagatttgtga |
12265857 |
T |
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| Q |
216 |
tttttagtacttgatgagaaaatgttaagcacatgatctatatttatagccaaaacttttaataatacatttattgtttaaaagattctttttacactca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12265856 |
tttttagtacttgatgagaaaatgttaagcacatgatctatatttatagccaaaacttttaataatacatttattgtttaaaagattctttttacactca |
12265757 |
T |
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| Q |
316 |
tttaaaatgtttgtctttttgcatttaatgtatcacaatttcttttattaaaaagtttaaacaattaataaatccattttttcnnnnnnnnttaattaat |
415 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
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| T |
12265756 |
tttaaaatgtttgtccttttgcatttaatgtatcacaatttcttttattaaaaagttaaaacaattaataaatccattttttcaaaaaaaattaattgat |
12265657 |
T |
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| Q |
416 |
tttataaggaaaatgat |
432 |
Q |
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| T |
12265656 |
tttataaggaaaatgat |
12265640 |
T |
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