View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_18 (Length: 360)
Name: NF3626_high_18
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 12839347 - 12839072
Alignment:
| Q |
14 |
atatgccgctttaccataagtggattacgtattgttgagttttggagtgcatttaagttactattaaaagaaaattctcatgaattttgttttaatacaa |
113 |
Q |
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| T |
12839347 |
atatgtcgctttaccataagtggattacgtattgttgagttttggagtgcatttaagttactattaaaagaaaattctcatgaattttgttttaatacaa |
12839248 |
T |
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| Q |
114 |
gatatatattttttcttaggaaagaaaattaatgcactacattgaaaaccaaacaagaaatacaatatgaaacttgataaaatatttgtgttcttgtcaa |
213 |
Q |
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| T |
12839247 |
gatatatattttttcttaggaaagaaaattaatgcactacattgaaaaccaaacaagaaatacaatatgaaacttgataaaatatttgtgtt-ttgtcaa |
12839149 |
T |
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| Q |
214 |
tgacaagttcactcgtgtaatgaaataagcaaacacaatcctcttgtgaaaagattatgtcttgtgactataagata |
290 |
Q |
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| T |
12839148 |
tgacaagttcactcgtgtaatgaaataagcaaacacaatcctcttgtgaaaagattatgtcttgtgactataagata |
12839072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 12839014 - 12838982
Alignment:
| Q |
313 |
tagatatgcccttatattacgaaggataaatgt |
345 |
Q |
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| T |
12839014 |
tagatatgcccttatattacgaaggataaatgt |
12838982 |
T |
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