View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3626_high_2 (Length: 851)
Name: NF3626_high_2
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 116 - 642
Target Start/End: Complemental strand, 17432350 - 17431820
Alignment:
| Q |
116 |
tttccttacactacatttatattctacctcattccctcccttttagttcctatcttaatcacttgccacaagtgcatgttgttacaactcacgtccctaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432350 |
tttccttacactacatttatattctacctcattccctcccttttagttcctatcttaatcacttgccacaagtgcatgttgttacaactcacgtccctaa |
17432251 |
T |
|
| Q |
216 |
aaaacctctgtccttgcatttctgttggtgcacccatgaccaactaattccctgctaccgtttctatttatctaacatcaactttagtagatgtaagatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17432250 |
aaaacctctgtccttgcatttctgttagtgcacccatgaccaactaattccctgctaccgtttctatttatctaacatcaactttagtggatgtaagatg |
17432151 |
T |
|
| Q |
316 |
cttaacaaagaccaacattctacacatgaaaagtataaatggcaatagatgttgcccactttaacactgtgtcaccattcacagctcatgcatttccttt |
415 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432150 |
cttaacaaagaccaacatcctacacatgaaaagtataaatggcaatagatgttgcccactttaacactgtgtcaccattcacagctcatgcatttccttt |
17432051 |
T |
|
| Q |
416 |
gtgtgatagataggtagcttatttgataaaatattaatcagtatcagcaaaaaacttttagagccaagtgcggcatcagtgtatgttgattttgcagcca |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432050 |
gtgtgatagataggtagcttatttgataaaatattaatcagtatcagcaaaaaacttatagagccaagtgcggcatcagtgtatgttgattttgcagcca |
17431951 |
T |
|
| Q |
516 |
agtgcgtcttgcatgggtttgctttaataagattagccgttt-----nnnnnnnnncatcagcaataaactaggagtccaggcatgtgttactattttgc |
610 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17431950 |
agtgcgtcttgcacgggtttgctttaataagattagccgtttaaaaaaaaaaaaaacatcagcaataaactaggagtccaggcatgtgttacta-tttgc |
17431852 |
T |
|
| Q |
611 |
aataaaaccatacatacttatgggaacagagt |
642 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
17431851 |
aataaaaccatacatacttatgggaaaagagt |
17431820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 706 - 834
Target Start/End: Complemental strand, 17431756 - 17431628
Alignment:
| Q |
706 |
tacttttacaggaaaactcaaagggcagtgccttcagaatcagaaccagaaacaatgtaatcagtataagaaaaataaacacatatttctgaattcttgg |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17431756 |
tacttttacaggaaaactcaaagggcagtgccttcagaatcagaaccagaaacaatgtaatcagtataagaaaaataaacacataattctgaattcttgg |
17431657 |
T |
|
| Q |
806 |
acaacttgtgcacaagggaagatccaagt |
834 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17431656 |
acaacttgtgcacaagggaagatccaagt |
17431628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 17432425 - 17432375
Alignment:
| Q |
65 |
agagagacaaaaatgcaataacatttcaagaaattgcaacgttgcttgcca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17432425 |
agagagacaaaaatgcaataacatttcaagaaattgcaaccttgcttgcca |
17432375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University