View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_20 (Length: 336)
Name: NF3626_high_20
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 53493206 - 53492989
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493206 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
53493107 |
T |
|
| Q |
101 |
taattattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493106 |
tacttattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
53493007 |
T |
|
| Q |
201 |
ctacgctttcttcatacat |
219 |
Q |
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|||||| |||||||||||| |
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| T |
53493006 |
ctacgc-ttcttcatacat |
53492989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16072363 - 16072156
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattg |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
16072363 |
tgatatttctggtttatatattctgagaccatctgcagtagagatatgggagactttgcaagtatgtttctcaacgatttgaatgcatttatatatattg |
16072264 |
T |
|
| Q |
101 |
taattattttatactcttgattagctagctatagagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | || ||||||| |||||||||||| ||||||||| ||| |
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| T |
16072263 |
tacttattttatactcttgattagctagctatggagttgatgcagaataaataaaatttatgattctttccaaatggtgatgttttagtttttggtaaaa |
16072164 |
T |
|
| Q |
201 |
ctacgctt |
208 |
Q |
| |
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|||||||| |
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| T |
16072163 |
ctacgctt |
16072156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53501007 - 53500922
Alignment:
| Q |
1 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53501007 |
tgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgtttctcaacgatttgaatgc |
53500922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 53492941 - 53492840
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatgtttctg |
332 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
53492941 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccctatgtttgtg |
53492842 |
T |
|
| Q |
333 |
ct |
334 |
Q |
| |
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|| |
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|
| T |
53492841 |
ct |
53492840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 53500892 - 53500791
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatgtttctg |
332 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
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| T |
53500892 |
gctgagagttgctttcatatttcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctacttccccatgtttgtg |
53500793 |
T |
|
| Q |
333 |
ct |
334 |
Q |
| |
|
|| |
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|
| T |
53500792 |
ct |
53500791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 16072095 - 16071994
Alignment:
| Q |
233 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctacttccctatgtttctg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||||||||||||||||||| || |
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| T |
16072095 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttaatccagagataaagaaaatgaatgttgagagctgctacttccctatgtttgtg |
16071996 |
T |
|
| Q |
333 |
ct |
334 |
Q |
| |
|
|| |
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|
| T |
16071995 |
ct |
16071994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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