View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_28 (Length: 271)
Name: NF3626_high_28
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 6133573 - 6133825
Alignment:
| Q |
1 |
ttatgtggccgaagctgtaatcaactgcgcggtagcatagattcagtaacccccatttagtgttagggtcggctgaattcggcatgttgatagtgcaata |
100 |
Q |
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| T |
6133573 |
ttatgtggccgaagctgtaatcaactgcgcggtagcatagattcagtaactcccatttagtgttagggtcggctgaattgggcatgttgatagtgcgata |
6133672 |
T |
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| Q |
101 |
gagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacact |
200 |
Q |
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| T |
6133673 |
gagggaatggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacact |
6133772 |
T |
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| Q |
201 |
gcatctcgtggaagatctacccagtttcgttctccagaatcggttacttgttt |
253 |
Q |
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| T |
6133773 |
gaatctcgtggaagatctacccagtttcgttctccagaatcggttacttgttt |
6133825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 6052255 - 6052089
Alignment:
| Q |
76 |
aattcggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtc |
175 |
Q |
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|||| |||||||| || |||| | |||| ||||||| || ||||||| ||||||| ||||||||||||||| || ||||| ||||| |||||||| ||| |
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| T |
6052255 |
aattgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaacattgtgagcgcgaacgagaagatcgattgcgtc |
6052156 |
T |
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| Q |
176 |
aagcttccggaaaatggataacactgcatctcgtggaagatctacccagtttcgttctccagaatcg |
242 |
Q |
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| T |
6052155 |
gagcttccggaaaatggataagactgcatctcgtggaagatccagccagtttcgttctccagaatcg |
6052089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 6045567 - 6045406
Alignment:
| Q |
81 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagct |
180 |
Q |
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||||||| ||| ||| ||||||| |||| ||||||||||||| ||||||| |||||||||| || | || |||| ||||| |||||| | || ||| | |
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| T |
6045567 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacgttatgagcgcgatggagaagatcgatcgtgtgaagtt |
6045468 |
T |
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| Q |
181 |
tccggaaaatggataacactgcatctcgtggaagatctacccagtttcgttctccagaatcg |
242 |
Q |
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| T |
6045467 |
tccggaaaatggttaatacgacatctgatggaagatccaaccagtttcgctctccagaatcg |
6045406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 6037242 - 6037106
Alignment:
| Q |
98 |
atagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataac |
197 |
Q |
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||||||| ||||||| || ||||||| |||||| | |||||||| || || |||||| |||||||| || | | ||||||| ||||||||||||| |
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| T |
6037242 |
atagaggaaagggtctttggagattttgcgccacgtagtgcaaaccctgggagtgcgaataagaatatcaatggtgggaagcttctggaaaatggataag |
6037143 |
T |
|
| Q |
198 |
actgcatctcgtggaagatctacccagtttcgttctc |
234 |
Q |
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|||||||||||||||||||| | |||||||||||||| |
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| T |
6037142 |
actgcatctcgtggaagatccagccagtttcgttctc |
6037106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 6040936 - 6040872
Alignment:
| Q |
81 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacatt |
145 |
Q |
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||||||| ||| ||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
6040936 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacatt |
6040872 |
T |
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