View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_30 (Length: 256)
Name: NF3626_high_30
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_30 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 14734831 - 14735073
Alignment:
| Q |
3 |
atactccttgtcacttggaaatcactaccacaaaagaagaaatcacatgagcgtaaagttatttagtcaactaagtacttgaaatagctccacactaaaa |
102 |
Q |
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| T |
14734831 |
atactccatgtcacctggaaatcactaccacaaaagaagagatcacatgagcataaagttatttagttaactaaatacttgaa-tagctccgcactaaaa |
14734929 |
T |
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| Q |
103 |
ttcaatatttacatattggatgaaatactactaatgatcattaggaagatcccgttagtgaccaacaccatttctaaaggcataactatttccagagtga |
202 |
Q |
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| T |
14734930 |
ttcaatatttacatattggatgaaatactactaatgaccattaggaagatcccattagtgaccaacaccatttctaaaggcataactatttccagagtga |
14735029 |
T |
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| Q |
203 |
catggtatatagcagaagaaacaactagtacttcgattcctatg |
246 |
Q |
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| T |
14735030 |
catggtgtatagtagaagaaacaactagtacttcgattcctatg |
14735073 |
T |
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Target: scaffold0430 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 5439 - 5344
Alignment:
| Q |
1 |
tcatactccttgtcacttggaaatcactaccacaaaagaagaaatcacatgagcgtaaagttatttagtcaactaagtacttgaaatagctccaca |
96 |
Q |
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| T |
5439 |
tcatactccttgtcacctagaagtcactgccacaaaagaagagatcacccgagcgtagagttatctagtctattaagtacttgaaatagctccaca |
5344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 10648041 - 10648128
Alignment:
| Q |
9 |
cttgtcacttggaaatcactaccacaaaagaagaaatcacatgagcgtaaagttatttagtcaactaagtacttgaaatagctccaca |
96 |
Q |
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| T |
10648041 |
cttgtcacatggaagtcactaccataaaaaaagagatcacacgagtgtagagttatttagtctacaaagtatttgaaatagctccaca |
10648128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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