View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_4 (Length: 668)
Name: NF3626_high_4
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 14 - 624
Target Start/End: Original strand, 53592299 - 53592900
Alignment:
| Q |
14 |
gagcacagacggccccagctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgagactacatgatggaaaac |
113 |
Q |
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| T |
53592299 |
gagcacagacggcgccggctacccaacagaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacttgcgtcaggctacatgatggaaaat |
53592398 |
T |
|
| Q |
114 |
gtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagagagaacatagcgatttcacctatctgtccca |
213 |
Q |
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| T |
53592399 |
gtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagagagaacatagcgatttcacctatctgtccca |
53592498 |
T |
|
| Q |
214 |
aacccaactacttgaagagaacagcaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttctaaaagataatatcaaacaaacatctttctt |
313 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
53592499 |
aacccaactacttgaagagaacaacaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttc--aaagataaaatcaaacaaacatctttctt |
53592596 |
T |
|
| Q |
314 |
cttgtcatctactttttccaatttcctgcaaacaataaaaattggattgatcacttacaagttacaacaaacaaaagtatatcaagagtagttgggttgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
53592597 |
attgtcatctactttttccaatttcctgcaaacaataaaaattggattgatcacttacaagttacaacaaacaaaagtacatcaagagtagttaggttgg |
53592696 |
T |
|
| Q |
414 |
-gatcctatgcttctctttacaaagaagaatgcaccaataaaaggggcccgtgagaatttcaaaactcattcttaatttcttactttctctttataaaac |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53592697 |
acatcctatgcttctctttacaaagaagaatgcaccaataaaagggggccgtgagaatttcaaaactcattcttaa--------tttctctttataaaac |
53592788 |
T |
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| Q |
513 |
caccataagttccaacatttaacatatcatctcaacctctctaacaactcatcaccataactcacctcctttactacaatcattcataagcacacatggt |
612 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53592789 |
caccataagtttcaacatttaacatatcatctcaacctctctaacaactcattaccataactcacctcctttactaaaatcattcataagcacacatggt |
53592888 |
T |
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| Q |
613 |
ttcatttccttc |
624 |
Q |
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|||||||||||| |
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| T |
53592889 |
ttcatttccttc |
53592900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 23779537 - 23779380
Alignment:
| Q |
14 |
gagcacagacggccccagctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgagactacatgatggaaaac |
113 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
23779537 |
gagcacatacggcgccggctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgaggctacatgatgaaaaac |
23779438 |
T |
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| Q |
114 |
gtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagg |
171 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
23779437 |
gtgtttggattggaggaggagaggtgagtggttatggaggttgtcggtggcggctagg |
23779380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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