View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_high_6 (Length: 619)
Name: NF3626_high_6
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 9712567 - 9713153
Alignment:
| Q |
1 |
aaacttaccgccaattcatttcagacatgcaccaacatacccaaatgcgactttcatcagccattttggtcatcaaattgtctttcattagttagtttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9712567 |
aaacttaccgccaattcatttcagacatgcaccaacatacctaaatgcgactttcatcagccattttggtcatcaaattgtctttcattagttagtttga |
9712666 |
T |
|
| Q |
101 |
ttctcaaatgcgtcttatgccggtcaattcgtctatatacaattaccaataaaagacacacctgcttttgttatttcaatatattcaaacacaattctga |
200 |
Q |
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| T |
9712667 |
ttctcaaatgcatcttatgtcagtcaattcgtctata----------------agacacacctgcttttgttatttcaatatattcaaacacaattctga |
9712750 |
T |
|
| Q |
201 |
catcgcctcacacgtttagctaccaaatgattatttactcttccacaatattttatttcgaagtacgcgtgttacttacatatagaggctatgctgaatg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9712751 |
catcgcctcacacgtttagctaccaaatgattatttactcttccacaatattttatttcgaagtacgcgtgttacttacatatagaggctatgctgaatg |
9712850 |
T |
|
| Q |
301 |
actgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacctaaatgtgaaatgataaattaatgaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9712851 |
actgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacctaaatgtgaaatgataaattaatgaatg |
9712950 |
T |
|
| Q |
401 |
ataatgattttaatgaaatatcaacaatgtgattctatgtcccagattcttggtctttgtataacaaatttgaacatattcatatgctatatatacttac |
500 |
Q |
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| T |
9712951 |
ataatgattttaatgaaatatcaacaatgtaattctatgtcccagattcttggtctttgtataacaaatttgaacatattcatatgc-atatatacttac |
9713049 |
T |
|
| Q |
501 |
ctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactgtgcatgcatattaaacaccatagtattgttaattagacaaaca |
600 |
Q |
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| T |
9713050 |
ctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactgtgcatgcatattaaacaccatagtattgttaattagacaaaca |
9713149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 9724493 - 9724586
Alignment:
| Q |
292 |
tgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctg----acaacagtttcttgtctatgtcccaaacctaaatgtga |
381 |
Q |
| |
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| T |
9724493 |
tgctgaatgtttgcaagagaagtgatttcttctttaacaatatacaagccagtcacacaacaatttcttgtctatgtcccaaacctatatgtga |
9724586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 31106309 - 31106202
Alignment:
| Q |
273 |
tacttacatatagaggctatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacc |
372 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| ||| || | || ||||| | |||||| ||||||||||||||| |
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| T |
31106309 |
tacttacatatacaggctatgttgaatgactgcaaaacaagtgatttcttctttagcaacatatacatcagacaatattttcttctctatgtcccaaacc |
31106210 |
T |
|
| Q |
373 |
taaatgtg |
380 |
Q |
| |
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|||||||| |
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| T |
31106209 |
taaatgtg |
31106202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 31106101 - 31106039
Alignment:
| Q |
495 |
acttacctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactg |
557 |
Q |
| |
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|||| |||||||||| ||||| || |||||||||| |||||||||||| |||||||||||||| |
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| T |
31106101 |
acttgcctcaatatgattattggaagtgacatttaaaaggatgccttggttctggatgaactg |
31106039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 2577163 - 2577195
Alignment:
| Q |
78 |
ttgtctttcattagttagtttgattctcaaatg |
110 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
2577163 |
ttgtcttttattagttagtttgattctcaaatg |
2577195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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