View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3626_low_13 (Length: 475)
Name: NF3626_low_13
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 6825629 - 6825955
Alignment:
| Q |
1 |
tttttataactaacatggcatgtttgccaattattaacatctccatccccatcccatctttgaatctcggaaagnnnnnnnn--taattaatccatattc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6825629 |
tttttataactaacatggcatgtttgccaattattaacatctccatctccatcccatctttgaatctcggaaaaaaaaattaattaattaatccatattc |
6825728 |
T |
|
| Q |
99 |
agtcaaaggagaatttcttcatcaaagttagggcaagttagtttggacgggttttatctttgatcataaaggataatgaaaccaaaataagaaggg--nn |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
6825729 |
agtcaaaggagaatttcttcatcaaagttagggcaagttagtttggacgggttttatctttgattataaaggataatgaaaccaaaacaagaagggaaaa |
6825828 |
T |
|
| Q |
197 |
nnnnnncttttaaaactattcttcttctttcatagttgaagatgaaccctggtgnnnnnnnnaagggtgaaccatgtagtttttgttaccctagaatgga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6825829 |
aaaaaacttttaaaactattcttcttctttcatagttgaagatgaaccctggtgttttttttaagggtgaaccatgtagtttttgttgccctagaatgga |
6825928 |
T |
|
| Q |
297 |
agtacataatttttatatgagcgagat |
323 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6825929 |
agtacataatttttatatgagcgagat |
6825955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6852822 - 6852638
Alignment:
| Q |
1 |
tttttataactaacatggcatgtttgc---caattattaacatctccatccccatcccatctttgaatctcggaaagnnnnnnnntaattaatccatatt |
97 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||| | | | |||||||||| |
|
|
| T |
6852822 |
tttttataactatcatgacatgtttgggatcaattattaacatctccatccccgtcccatatttgaatctcgaa-----ttttttttttgaatccatatt |
6852728 |
T |
|
| Q |
98 |
cagtcaaaggagaatttcttcatcaaagttagggcaagttagtttggacgggttttatctttgatcataaaggataatgaaaccaaaataagaa |
191 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||| ||||| |
|
|
| T |
6852727 |
caatcaaaggagagtttcttcatcaaagttagggca----agtttggacgggttttatcttcgatcgtaaaggataaagaaaccaaaacaagaa |
6852638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 6826015 - 6826084
Alignment:
| Q |
391 |
gagagtgaagcttgggggatgcttaggcctcaaatggatcataattctggatcaccagagggttattttt |
460 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
6826015 |
gagagtgaagtttgggggatgcttaggcctcaaatggatcataactctgggtcaccagagggttattttt |
6826084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 6852464 - 6852374
Alignment:
| Q |
331 |
tttctctgtgactaatttgttcatatgacagatgttttacaggctt----atatgactccggcggagagtgaagcttgggggatgcttagg |
417 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| |||||| |||||| || |||||||||||||| |||||| ||||||||| |
|
|
| T |
6852464 |
tttctttgtgattaattgcttcatatgacagattttttaaaggcttctatatatgattctggcggagagtgaagtttggggaatgcttagg |
6852374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 6852627 - 6852589
Alignment:
| Q |
206 |
ttaaaactattcttcttctttcatagttgaagatgaacc |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
6852627 |
ttaaaactattctttttctttcatagttaaagatgaacc |
6852589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 9680058 - 9680112
Alignment:
| Q |
354 |
tatgacagatgttttacaggcttatatgactccggcggagagtgaagcttggggg |
408 |
Q |
| |
|
||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
9680058 |
tatgacaaatgttttaaaggcttctatgtctccggcggagagtgaagcttggggg |
9680112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 41687506 - 41687452
Alignment:
| Q |
354 |
tatgacagatgttttacaggcttatatgactccggcggagagtgaagcttggggg |
408 |
Q |
| |
|
||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
41687506 |
tatgacaaatgttttaaaggcttctatgtctccggcggagagtgaagcttggggg |
41687452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 17160649 - 17160595
Alignment:
| Q |
354 |
tatgacagatgttttacaggcttatatgactccggcggagagtgaagcttggggg |
408 |
Q |
| |
|
||||||| |||| ||| | |||| |||| |||||||||||||||||||||||||| |
|
|
| T |
17160649 |
tatgacatatgtcttaaaagcttctatgtctccggcggagagtgaagcttggggg |
17160595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University