View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_18 (Length: 409)
Name: NF3626_low_18
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 56167419 - 56167801
Alignment:
| Q |
17 |
agaaggatggtgtggaggagaagcccgaggaagctgatgctcagcggcgtaaggaggaggctgctgatgcttatgatacgtttgatatgagggttgatcg |
116 |
Q |
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| T |
56167419 |
agaaggatggtgtcgaggagaagcccgaggaagctgatgctcagcggcgtaaggaggaggctgctgatgcttatgatacgtttgatatgagggttgatcg |
56167518 |
T |
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| Q |
117 |
tcattggagtgagaagaagcttgaggaaatgaccgagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccgaga |
216 |
Q |
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| T |
56167519 |
tcattggagtgagaagaagcttgaggaaatgaccgagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccaaga |
56167618 |
T |
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| Q |
217 |
cctatgaggagttgggttgagagtaagttgagtcaagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgcta |
316 |
Q |
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| T |
56167619 |
cctatgaggagttgggttgagagtaagttgagtcaagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgcta |
56167718 |
T |
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| Q |
317 |
ttccgcttggacttcaacagcgcgatgttatcggcgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatg |
399 |
Q |
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| T |
56167719 |
ttccgcttggacttcagcagcgcgatgttatcggcgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatg |
56167801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 708285 - 707903
Alignment:
| Q |
17 |
agaaggatggtgtggaggagaagcccgaggaagctgatgctcagcggcgtaaggaggaggctgctgatgcttatgatacgtttgatatgagggttgatcg |
116 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
708285 |
agaaggatggtgtggaggagaagcctgaggaggctgatgctcaaaggcggaaagaggaggctgctgatgcttatgatgcttttgatatgagggttgatcg |
708186 |
T |
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| Q |
117 |
tcattggagtgagaagaagcttgaggaaatgaccgagagggattggcgtatatttagggaagattataacatttcttataagggttccaagattccgaga |
216 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
708185 |
tcattggagtgagaagaatcttgaggaaatgcaggagagggattggcgtatttttagggaagattataatatttcgtataagggttcaaagattccgagg |
708086 |
T |
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| Q |
217 |
cctatgaggagttgggttgagagtaagttgagtcaagagcttttgaaggctgtggagaaggctggttataaaaccccttctcccattcagatggctgcta |
316 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
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| T |
708085 |
cctattaggagttgggttgagagtaagttgagtcaagagattttgaaggctgtggagaaggctggttataaaaccccttcaccgattcagatggcttcta |
707986 |
T |
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| Q |
317 |
ttccgcttggacttcaacagcgcgatgttatcggcgttgctgagacaggttctgggaagactgctgcgtttgttttgcctatg |
399 |
Q |
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|||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
707985 |
ttccgcttggacttcagcaacgcgatgttatcggtgttgctgagacgggttctgggaagactgctgcgtttgtgctgcctatg |
707903 |
T |
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