View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3626_low_2 (Length: 861)

Name: NF3626_low_2
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3626_low_2
NF3626_low_2
[»] chr2 (2 HSPs)
chr2 (11-652)||(17431820-17432465)
chr2 (716-844)||(17431628-17431756)


Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 11 - 652
Target Start/End: Complemental strand, 17432465 - 17431820
Alignment:
Q  11 cagagaacaggaagaaatgtgcaagtataagatgaaaaacagagagacaaaaatgcaataacatttcaagaaattgcaaccttgcttgccacccagttca 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432465 cagagaacatgaagaaatgtgcaagtataagatgaaaaacagagagacaaaaatgcaataacatttcaagaaattgcaaccttgcttgccacccagttca 17432366  T
Q  111 ttattacctcgtcactttccttacactacatttatattctacctcattccctcccttttagttcctatcttaatcacttgccacaagtgcatgttgttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432365 ttattacctcgtcactttccttacactacatttatattctacctcattccctcccttttagttcctatcttaatcacttgccacaagtgcatgttgttac 17432266  T
Q  211 aactcacgtccctaaaaaacctctgtccttgcatttctgttggtgcacccatgaccaactaattccctgctaccgtttctatttatctaacatcaacttt 310  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432265 aactcacgtccctaaaaaacctctgtccttgcatttctgttagtgcacccatgaccaactaattccctgctaccgtttctatttatctaacatcaacttt 17432166  T
Q  311 agtagatgtaagatgcttaacaaagaccaacattctacacatgaaaagtataaatggcaatagatgttgcccactttaacactgtgtcaccattcacagc 410  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432165 agtggatgtaagatgcttaacaaagaccaacatcctacacatgaaaagtataaatggcaatagatgttgcccactttaacactgtgtcaccattcacagc 17432066  T
Q  411 tcatgcatttcctttgtgtgatagataggtagcttatttgataaaatattaatcagtatcagcaaaaaacttttagagccaagtgcggcatcagtgtatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17432065 tcatgcatttcctttgtgtgatagataggtagcttatttgataaaatattaatcagtatcagcaaaaaacttatagagccaagtgcggcatcagtgtatg 17431966  T
Q  511 ttgattttgcagccaagtgcgtcttgcatgggtttgctttaataagattagccgttt-----nnnnnnnnncatcagcaataaactaggagtccaggcat 605  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||    
T  17431965 ttgattttgcagccaagtgcgtcttgcacgggtttgctttaataagattagccgtttaaaaaaaaaaaaaacatcagcaataaactaggagtccaggcat 17431866  T
Q  606 gtgttactattttgcaataaaaccatacatacttatgggaacagagt 652  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17431865 gtgttacta-tttgcaataaaaccatacatacttatgggaaaagagt 17431820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 716 - 844
Target Start/End: Complemental strand, 17431756 - 17431628
Alignment:
Q  716 tacttttacaggaaaactcaaagggcagtgccttcagaatcagaaccagaaacaatgtaatcagtataagaaaaataaacacatatttctgaattcttgg 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17431756 tacttttacaggaaaactcaaagggcagtgccttcagaatcagaaccagaaacaatgtaatcagtataagaaaaataaacacataattctgaattcttgg 17431657  T
Q  816 acaacttgtgcacaagggaagatccaagt 844  Q
    |||||||||||||||||||||||||||||    
T  17431656 acaacttgtgcacaagggaagatccaagt 17431628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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