View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_34 (Length: 244)
Name: NF3626_low_34
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8590769 - 8590564
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
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| T |
8590769 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatacgatttttattcttcattaaactaaattttatacaatcagttgtggtagaaaatagt |
8590670 |
T |
|
| Q |
101 |
tattgttgatcggttttgtatatcatgtgttatgtcttcgttaaccttaataaatttttatggttccatccctgtcaccaacatctcaatgagaacgcag |
200 |
Q |
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| T |
8590669 |
tattgttgatcgattttgtttatcacgtgttatgtcttcgctacccttaataaatttttatggttccattcctgtcatcaacatctcaatgagaacgcag |
8590570 |
T |
|
| Q |
201 |
aagagt |
206 |
Q |
| |
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|||||| |
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| T |
8590569 |
aagagt |
8590564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 45361633 - 45361532
Alignment:
| Q |
9 |
gtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagttattgttg |
108 |
Q |
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|||||||||| ||||||||| || ||||||||||| |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||||| ||||||||| |
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| T |
45361633 |
gtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaattgtaggaaataattattgttg |
45361534 |
T |
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| Q |
109 |
at |
110 |
Q |
| |
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|| |
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| T |
45361533 |
at |
45361532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39212519 - 39212624
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
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||||||| ||||||||||||||| |||| || | | ||||| || ||||| |||||||| |||||||||||||| |||||||| | | ||||||| || |
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| T |
39212519 |
tttgattggtagtttttgtaagtgtttgttttgccggtatataagacttttattcttcatttaactaaattttatataatcagtaatcgcagaaaattgt |
39212618 |
T |
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| Q |
101 |
tattgt |
106 |
Q |
| |
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|||||| |
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|
| T |
39212619 |
tattgt |
39212624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6864139 - 6864263
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
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|
||||||| ||||||||||||||||||||| | || | ||||| |||||||| |||||| | |||||||||||||| ||| ||| ||||||||| ||| |
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| T |
6864139 |
tttgattggtagtttttgtaagtatttgccttggcaacatataagatttttattcttcacttaactaaattttatataattggtaactgtagaaaaaagt |
6864238 |
T |
|
| Q |
101 |
tattgttgatcggttttgtatatca |
125 |
Q |
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|| ||||||||| | |||| ||||| |
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| T |
6864239 |
tactgttgatcgatgttgtttatca |
6864263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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