View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_36 (Length: 239)
Name: NF3626_low_36
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3908808 - 3908995
Alignment:
| Q |
1 |
catatattaatgatcatttaaatgaaccctaatttgaaaccctttattaaactagttgtgttcttcttcctggtcaagaaaataaatggaagggttaata |
100 |
Q |
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| T |
3908808 |
catatactaatgatcatttaaatgaaccctaatttgaaaccctttattaaactagttgtgttcttcttccgggtcaagaaaataaatggaagggttaata |
3908907 |
T |
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| Q |
101 |
tatacttttccacattatatatgattatatttttcttgattgagaaattaaagttaaagagagtgtgtgaaaaaatgtatttttcaatta |
190 |
Q |
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| T |
3908908 |
tatacttttccacattatatatgattatatttttcttgattgagaaattaaagttaaagaga--gtgtggaaaaatgtatttttcaatta |
3908995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 3908977 - 3909011
Alignment:
| Q |
205 |
aaaatgtatttttcaattaaaagtagtagaaaaat |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3908977 |
aaaatgtatttttcaattaaaagtagtagaaaaat |
3909011 |
T |
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