View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_37 (Length: 227)
Name: NF3626_low_37
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_37 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 40948 - 41117
Alignment:
| Q |
61 |
ataaaggtttta--tgaggtctttccttccatgttccataattgaaaatcatg-ttaggcaataatttttatattaacattgaaaagagataagtcatga |
157 |
Q |
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| T |
40948 |
ataaaggttttacatgagctctttccttccatgttccataattgaaaatcatgtttaggcaataa-ttttatattagcattgaaaagagatgagtcatgg |
41046 |
T |
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| Q |
158 |
cataacgct-acnnnnnnnncattgaatcactttgtcctgatattacttgagaaattcttgttttgtatta |
227 |
Q |
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| T |
41047 |
cataaaactaaaacaaaaaacattgaaacattttgtcctgatattacttgagaaattcctgctttgtatta |
41117 |
T |
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Target: scaffold0038; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 25128 - 25218
Alignment:
| Q |
26 |
tttggtatgttttcaataaaatcacgtagatttcaataaaggtttt--atgaggtctttccttccatgttccataattgaaaatcatgtta |
114 |
Q |
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| T |
25128 |
tttggtatgttttcaataaaatcttgtagatttctataaaggtttttaatgaggtgtttccttccatgttccataattgaaaatcatgtta |
25218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 28240786 - 28240955
Alignment:
| Q |
61 |
ataaaggtttta--tgaggtctttccttccatgttccataattgaaaatcatg-ttaggcaataatttttatattaacattgaaaagagataagtcatga |
157 |
Q |
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| T |
28240786 |
ataaaggttttacatgagctctttccttccatgttccataattgaaaatcatgtttaggcaataa-ttttatattagcattgaaaagagatgagtcatgg |
28240884 |
T |
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| Q |
158 |
cataacgct-acnnnnnnnncattgaatcactttgtcctgatattacttgagaaattcttgttttgtatta |
227 |
Q |
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| T |
28240885 |
cataaaactaaaacaaaaaacattgaaacattttgtcctgatattacttgagaaattcctgctttgtatta |
28240955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 28224630 - 28224720
Alignment:
| Q |
26 |
tttggtatgttttcaataaaatcacgtagatttcaataaaggtttt--atgaggtctttccttccatgttccataattgaaaatcatgtta |
114 |
Q |
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| T |
28224630 |
tttggtatgttttcaataaaatcttgtagatttctataaaggtttttaatgaggtgtttccttccatgttccataattgaaaatcatgtta |
28224720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 28156307 - 28156399
Alignment:
| Q |
14 |
gatagaaaccaa-tttggtatgttttcaataaaatcacgtagatttcaataaaggttttatgaggtctttccttccatgttccataattgaaa |
105 |
Q |
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| T |
28156307 |
gataaaaaccaactttcgtatgttttcaatgaaatcatgtagatttttataatggttttatgagctctttccttccatgttccataattgaaa |
28156399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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