View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_6 (Length: 644)
Name: NF3626_low_6
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 234 - 473
Target Start/End: Complemental strand, 27492134 - 27491895
Alignment:
| Q |
234 |
tactctcttcaatttaggccataaactatataaatagtagtattaaaaataattcatgaagtatacaaagttcatcaattttatcatgtcaaatattaaa |
333 |
Q |
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| T |
27492134 |
tactctcttcaatttaggccataaactatataaatagtagtattaaaaataattgatgaagtatacaaagttcatcaattttgttatgtcaaatattaaa |
27492035 |
T |
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| Q |
334 |
ttgaaaacttgtatatattcaaggaattaaatcgccgtatttcattaattgtacaagtgacctttaatttgttaaggattgttttgaatgtttcattccg |
433 |
Q |
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| T |
27492034 |
ttgaaaacttgtatatattcaagggattaaatcgccgtatttcatcaattgtacaagtaaccttcagtttgttaaggattgttttgaatgtttcatctca |
27491935 |
T |
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| Q |
434 |
tgatgtgttgagtaggagattagaaagcataactctatac |
473 |
Q |
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| T |
27491934 |
tgatgtgttgagtaggagattagaaagcataactctatac |
27491895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 27492337 - 27492225
Alignment:
| Q |
25 |
gtttacatactttgatggagacgttgagttttttcggaagccatgaaaagagaaagtctgtaaagtgaagatgaaaaggaacgcaacatttgttcagttc |
124 |
Q |
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| T |
27492337 |
gtttacatactttgatggagacgttgagttttttcggaagccatgaaaagagaaagtctgtgaaatgaagatgaaaaggaacgcaacatctgttcagttc |
27492238 |
T |
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| Q |
125 |
ttcctaggacacc |
137 |
Q |
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| T |
27492237 |
ttcctaggacacc |
27492225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 516 - 626
Target Start/End: Complemental strand, 27491848 - 27491735
Alignment:
| Q |
516 |
cgtgaaataagtttgtttgattggtttgatgcggctaattagagctatgaacttagtttttataacaaaaacgatgttaagtaaccaaacaatatg---a |
612 |
Q |
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| T |
27491848 |
cgtgaaataagtttgtttgattggtttgatgcagctaattagagttacgaacttagtttttataacaaaaacgatgtttagtaaccaaacaatatgataa |
27491749 |
T |
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| Q |
613 |
tatatggtgatgag |
626 |
Q |
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| T |
27491748 |
tatatggtgatgag |
27491735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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