View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3626_low_8 (Length: 564)
Name: NF3626_low_8
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_8 |
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| [»] scaffold0416 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 15391049 - 15390733
Alignment:
| Q |
7 |
tccaagaatattgttgagaaatgttgatcaaccatcaggagtatgcaatggtaaacaccttataaatacccaaattgagaattacgtgtttggggaaaat |
106 |
Q |
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| T |
15391049 |
tccaataatattgttgagaaatattgatcaaccattaggagtatgcaatggtaaacgccttataaatatccaaattgagaattacgtgtttggggaaaat |
15390950 |
T |
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| Q |
107 |
ctcatatcacaaagcagtacttcatctgatcccaaaaatttctttcacatttcaacataaacaaatgtccattgttgtctcatctacaaagactatcaat |
206 |
Q |
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| T |
15390949 |
gtcatatcacgaagcagtactccatctgatcccaaaa-tttctttcacatttcaacgtaaacaaatgtccattgttgtctcatctgcaaagactatcaat |
15390851 |
T |
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| Q |
207 |
acgaggaatctcttcaaaatgttgagaattgtttacaactttataatacataaatttgtatgttgttctttttaggggtaattacattagtcgctgtatt |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15390850 |
acgaggaatctctacaaaatgttgagaattgtttacaactttataatacataaatttgtatgttgttctttttaggggtaattacattagtcgctgtatt |
15390751 |
T |
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| Q |
307 |
cttttatctgcatttttt |
324 |
Q |
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| T |
15390750 |
tttttatctgtatttttt |
15390733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 373 - 521
Target Start/End: Complemental strand, 15390706 - 15390558
Alignment:
| Q |
373 |
tattttttagggaagatattaaataattcttatcatcaatttatctgatgtgataataagaagtttaaactatttcaaagnnnnnnnnnnnnnnnnnnng |
472 |
Q |
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| T |
15390706 |
tattttttagggaagatattaaataattcttatcatcaatttatctaatgtgataataagaagtctgaactatttcgaagtttttattatttatcttttg |
15390607 |
T |
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| Q |
473 |
gaaatatcaactcatgttcaatgacagctattatatcatgctcaattat |
521 |
Q |
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| T |
15390606 |
gaaacatcaactcatgttcaatgacaactattatatcatgctcaattat |
15390558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 365
Target Start/End: Complemental strand, 21927499 - 21927345
Alignment:
| Q |
213 |
aatctcttcaaaatgttgagaattgtttacaactttataatacataaatttgtatgttgttctttttaggggtaattacattag-tcgctgtattc--tt |
309 |
Q |
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|||||||| ||||||||| ||||||||||| | |||| | |||||||||||||| ||||||||||||||||||||||||||| | | | | ||| || |
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| T |
21927499 |
aatctctttaaaatgttggcaattgtttaca-cattatcacgcataaatttgtatgatgttctttttaggggtaattacattagctggatttgttctttt |
21927401 |
T |
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| Q |
310 |
ttatctgcattttttgatccattatattgtaatggactcaacaagagatattaaat |
365 |
Q |
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| T |
21927400 |
ttgtctgtattttttgatctattatattgtaatggattcaacaagagatattaaat |
21927345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 5145 - 5206
Alignment:
| Q |
20 |
ttgagaaatgttgatcaaccatcaggagtatgcaatggtaaacaccttataaatacccaaat |
81 |
Q |
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||||||||| |||||||||||| |||| |||||||||||| |||||||||| ||| ||||| |
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| T |
5145 |
ttgagaaatattgatcaaccattaggattatgcaatggtacgcaccttataattacacaaat |
5206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 41989356 - 41989287
Alignment:
| Q |
20 |
ttgagaaatgttgatcaaccatcaggagtatgcaatggtaaacaccttataaatacccaaattgagaatt |
89 |
Q |
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| T |
41989356 |
ttgagaaatattgatcaaccgttaggattatgcaatggtacgcgccttataattacgcaaatggagaatt |
41989287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 4474698 - 4474758
Alignment:
| Q |
20 |
ttgagaaatgttgatcaaccatcaggagtatgcaatggtaaacaccttataaatacccaaa |
80 |
Q |
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||||||||| ||||||| |||| |||| |||||||||||| | |||||||||||| |||| |
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| T |
4474698 |
ttgagaaatattgatcagccattaggattatgcaatggtacgcgccttataaatacgcaaa |
4474758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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