View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3626_low_9 (Length: 558)
Name: NF3626_low_9
Description: NF3626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3626_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 33806161 - 33806690
Alignment:
| Q |
11 |
cagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
110 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806161 |
cagagaaaatgaatttccataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
33806260 |
T |
|
| Q |
111 |
aatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
210 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806261 |
aacgattttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
33806360 |
T |
|
| Q |
211 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806361 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
33806460 |
T |
|
| Q |
311 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806461 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
33806560 |
T |
|
| Q |
411 |
attcctctataaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgacgtagcta |
510 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
33806561 |
attcctctgtaaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgatggagcta |
33806660 |
T |
|
| Q |
511 |
gccatgtggacgattgctaatagaaacttg |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33806661 |
gccatgtggacgattgctaatagaaacttg |
33806690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 33801679 - 33802208
Alignment:
| Q |
11 |
cagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
110 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||| || |||| ||||||||| |||||||||| || ||| | |
|
|
| T |
33801679 |
cagagacaatgaattgccataacaaagacttattgttatcatagaacctccaagaattatcactgagatttgcaaaagccacaacatcaccattcttgtt |
33801778 |
T |
|
| Q |
111 |
aatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
210 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33801779 |
aatcgttttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
33801878 |
T |
|
| Q |
211 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33801879 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
33801978 |
T |
|
| Q |
311 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33801979 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
33802078 |
T |
|
| Q |
411 |
attcctctataaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgacgtagcta |
510 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
33802079 |
attcctctgtaaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgatggagcta |
33802178 |
T |
|
| Q |
511 |
gccatgtggacgattgctaatagaaacttg |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33802179 |
gccatgtggacgattgctaatagaaacttg |
33802208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 33812143 - 33811614
Alignment:
| Q |
11 |
cagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
110 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33812143 |
cagagaaaatgaatttccataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
33812044 |
T |
|
| Q |
111 |
aatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
210 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33812043 |
aacgattttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
33811944 |
T |
|
| Q |
211 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33811943 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcctgtgaatgcatcaaagtatcagttggataactaaaactttgccaaa |
33811844 |
T |
|
| Q |
311 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811843 |
ttaccgtattattgtcgtccttaccaagcaaaaccaaatttccagtgttttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttcc |
33811744 |
T |
|
| Q |
411 |
attcctctataaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgacgtagcta |
510 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |
|
|
| T |
33811743 |
atctttcagtaaataggcatttccttttttatcaaactcgaaattatcataattggaaactggtagtgctctattagcagtccaaagcacggtggagcta |
33811644 |
T |
|
| Q |
511 |
gccatgtggacgattgctaatagaaacttg |
540 |
Q |
| |
|
||| |||||||||| |||||||||||||| |
|
|
| T |
33811643 |
gccgcgtggacgattactaatagaaacttg |
33811614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 540
Target Start/End: Complemental strand, 31027819 - 31027288
Alignment:
| Q |
9 |
agcagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgacctta |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
31027819 |
agcagagaaaatgaattgccataacaaagacttattgttatcatagaacctccaagaattgtcactgagatttgcaaacgccacaacatggccgacctta |
31027720 |
T |
|
| Q |
109 |
tcaatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacat |
208 |
Q |
| |
|
|| || ||||||||| |||| ||||||||||||||||| || |||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
31027719 |
tctattattttacggttatccttctgcatagtccaatatgtttgtggagttttgtaaccagctgaaagaataacattacctgatttgatctcaagaacat |
31027620 |
T |
|
| Q |
209 |
aggtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgcca |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31027619 |
aggtcaagttatttggactaggttcactggtaagtttcattccctctttgaattcctgcgaaggcatcaaagtatcagttggataactaaaactttgcca |
31027520 |
T |
|
| Q |
309 |
aattaccgtattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagtt |
408 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
31027519 |
aattaccgtatcattgtcgtcgttaccaagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaatt |
31027420 |
T |
|
| Q |
409 |
ccattcctctataaataggcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaagcacgacgtagc |
508 |
Q |
| |
|
|||| ||| ||| |||||||||| |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
31027419 |
ccatctttctccaaaaaggcatttccatttttatcaaacacgaaactatcgtaattggaaacaggtaatgctctattagcagcccaaagcacggtggagc |
31027320 |
T |
|
| Q |
509 |
tagccatgtggacgattgctaatagaaacttg |
540 |
Q |
| |
|
||||| ||||||||||||| | || ||||||| |
|
|
| T |
31027319 |
tagccgtgtggacgattgccagtaaaaacttg |
31027288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 49462784 - 49462448
Alignment:
| Q |
11 |
cagagaaaatgaattgctataacaaagacctattgttatcatagaatctccaagaattgtccctgatatttgcaaatgccacaacatggccgaccttatc |
110 |
Q |
| |
|
||||||||||||||||| | ||||||||| | |||| |||||| ||||||||||||||||| || | ||| || | |||||||||| || ||||||| |
|
|
| T |
49462784 |
cagagaaaatgaattgccacaacaaagacttcttgtcatcataaaatctccaagaattgtcactaagattcgccgaaaccacaacatgaccatccttatc |
49462685 |
T |
|
| Q |
111 |
aatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacatag |
210 |
Q |
| |
|
|||| |||| | | |||| | |||||||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
49462684 |
aatggttttcctgttatcctcctgcatagtccaataaacctgtggaattttaaaaccagcagaaagaacaacattaccagatttaatctcaagaacatag |
49462585 |
T |
|
| Q |
211 |
gtcaagttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaa |
310 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||| || || ||| | ||| |||||| ||||||||||| ||| || |||||||||||||| |
|
|
| T |
49462584 |
gtcaaattatttgaactaggttcactagtaatcttcattccttccttaaaaacctgttgaggcatcaaagtatcagtaggaaaatcaaaactttgccaaa |
49462485 |
T |
|
| Q |
311 |
ttaccgtattattgtcgtcgttaccaagcaaaaccaaatt |
350 |
Q |
| |
|
|||||||| |||| || || ||||||||||||||||| |
|
|
| T |
49462484 |
ttaccgtactatt---atccttcccaagcaaaaccaaatt |
49462448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 10071262 - 10071418
Alignment:
| Q |
104 |
ccttatcaatgattttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaag |
203 |
Q |
| |
|
|||||||||| |||| ||| || | |||||||||||| | |||||| ||||||||| |||||||| |||| || | ||| ||||||||| |||| ||| |
|
|
| T |
10071262 |
ccttatcaattgttttgcggttacccttctgcatagtctagtaagtcagtggagtttccaaaccagcagaaacaatagcattaccagattttatctgaag |
10071361 |
T |
|
| Q |
204 |
aacataggtcaagttatttgaactaggttcactggtaagtttcattccctctttgaa |
260 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||||||| || |||||||||| |
|
|
| T |
10071362 |
aacataggtcgagttatttggaataggttcacttgtaagtttctttacctctttgaa |
10071418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 7815117 - 7815187
Alignment:
| Q |
153 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
223 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
7815117 |
tggagttttgaaacaagctgaaagtataacattaccagatttgatctcaataacaaaggtcaagttatttg |
7815187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 49462362 - 49462293
Alignment:
| Q |
427 |
gcatttccttttttatcaaacacaaaattatcaacattggaaactggtaatgctctattagcagtccaaa |
496 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| ||| ||||||||| | |||||||||||||||||| |
|
|
| T |
49462362 |
gcattaccctttttatcaaagacaaaattatcagaattagaaactggttttcctctattagcagtccaaa |
49462293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 2529639 - 2529715
Alignment:
| Q |
115 |
attttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccaga |
191 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||| |||||||| || ||||| | ||||||| ||||| |||||| |
|
|
| T |
2529639 |
atttttcggatatcattttgcatagaccaataaggctgtggagattgtaaacctgtggaaagaagaacattaccaga |
2529715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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