View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3627_high_16 (Length: 216)
Name: NF3627_high_16
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_high_16 |
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| [»] scaffold1805 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold1142 (1 HSPs) |
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Alignment Details
Target: scaffold1805 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold1805
Description:
Target: scaffold1805; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1120 - 1168
Alignment:
| Q |
1 |
ttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat |
49 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1120 |
ttagtaagttcatcaccaacttatagtatggagcaagggttggtccaat |
1168 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22394497 - 22394545
Alignment:
| Q |
1 |
ttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat |
49 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
22394497 |
ttagtaagttcatcaccaacttatagtatgtatcatgggttggtccaat |
22394545 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 30224617 - 30224586
Alignment:
| Q |
185 |
tttacctttcaagaacaaagatttcaccatct |
216 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30224617 |
tttacctttcaagaacaaagatttcaccatct |
30224586 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 27980063 - 27980094
Alignment:
| Q |
1 |
ttagtaagttcatcaccaacttatagtatgta |
32 |
Q |
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| T |
27980063 |
ttagtaagttcatcaccaacttatagtatgta |
27980094 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27379516 - 27379564
Alignment:
| Q |
1 |
ttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat |
49 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
27379516 |
ttagtaagttcgtcaccaacttatagtgtgtaccgagggttggttcaat |
27379564 |
T |
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Target: scaffold1142 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1643 - 1691
Alignment:
| Q |
1 |
ttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat |
49 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| | ||||||||| |||| |
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| T |
1643 |
ttagtaagttcgtcaccaacttatagtgtgtaccgagggttggttcaat |
1691 |
T |
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