View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3627_high_9 (Length: 250)
Name: NF3627_high_9
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43224091 - 43224316
Alignment:
| Q |
1 |
aagaatataaacgacatgagaacnnnnnnnntgctcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatattg |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43224091 |
aagaataaaaacgacatgagaacaaaaaaaatgctcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---ttg |
43224187 |
T |
|
| Q |
101 |
tagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43224188 |
tagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaacaa |
43224287 |
T |
|
| Q |
201 |
ccatcgttaatttcctgatgccacaaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43224288 |
tcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University