View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3627_low_1 (Length: 714)
Name: NF3627_low_1
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 10306775 - 10306411
Alignment:
| Q |
7 |
gagagatgaaacgtaggaagtgaatcgattgctcgttgtatttcccgcgccggtggaggtggttgcgacggcggtggtgttgaatcggaggtgaaatgga |
106 |
Q |
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| T |
10306775 |
gagaaatgaaacgtaggaagtgaatcgattgctcgttgtatttccggcgcaggttgaggtggttgcgacgacggtggtgttgaatcggaggtgaaatgga |
10306676 |
T |
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| Q |
107 |
aaggaatcggagggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcatcgtcaatggtggcggtggttgtggtgatcgcggtggtgt |
206 |
Q |
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| T |
10306675 |
acggaatcggagggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcgtcgtcaatggtgg---------tggtgatcgcggtggtgt |
10306585 |
T |
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| Q |
207 |
tgaatcggagaggagacgtcggcgatttatgcggatttgaaggaaacggagcatgagtgaaagcatgaaggtgatgaagagaatagcgagaatgatgaga |
306 |
Q |
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| T |
10306584 |
tgaatcggagaggagacgtcggcgatttatgcggagttgaaggaaacggagcatgagtgaaagcatgaaggtgatgaagagaatagcgagaatgatgaga |
10306485 |
T |
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| Q |
307 |
atggtggagaatactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatggtggaatgaga |
380 |
Q |
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| T |
10306484 |
atggtggagaatactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatggtggaatgaga |
10306411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 404 - 697
Target Start/End: Complemental strand, 10306414 - 10306121
Alignment:
| Q |
404 |
gagaacagtgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatataagtcacc-tttgcctcatgcg |
502 |
Q |
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| T |
10306414 |
gagaacaatgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatg--agtcaccctttgcctcatgcg |
10306317 |
T |
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| Q |
503 |
tgtggttggttttggtgtggatgagagcatttttgtatcttctgatttcattttgtaaacggagtatcaatcttcaatataatt-aatattcatatagta |
601 |
Q |
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| T |
10306316 |
tgtggttggttttggtgtgaatgagagcatttttgtatcttctgatttcattttgtaaacggagtattaatcttcaatataatttaatattcatatagta |
10306217 |
T |
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| Q |
602 |
caaaaatgtaaatgcagtagtggtaatgttagtatttcacagtaatcggttattgtccttcgtcttctatgtttcatgaaacctctcaggtgtata |
697 |
Q |
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| T |
10306216 |
caaaaatgtaaatacagtagtactaatgttagtattttacagtaatcggttattgtccttcgtcttctatgtttcatgaaatctctcaggtgtata |
10306121 |
T |
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