View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3627_low_12 (Length: 229)

Name: NF3627_low_12
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3627_low_12
NF3627_low_12
[»] chr2 (3 HSPs)
chr2 (22-212)||(15886259-15886459)
chr2 (105-178)||(19935604-19935677)
chr2 (108-178)||(26368802-26368872)
[»] chr4 (1 HSPs)
chr4 (108-178)||(17779544-17779614)
[»] chr5 (3 HSPs)
chr5 (87-178)||(5580231-5580322)
chr5 (105-175)||(16983862-16983932)
chr5 (101-142)||(34671961-34672002)
[»] scaffold0015 (1 HSPs)
scaffold0015 (77-175)||(80235-80333)
[»] chr1 (1 HSPs)
chr1 (144-178)||(39219517-39219551)
[»] chr8 (1 HSPs)
chr8 (106-178)||(23431065-23431137)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 15886259 - 15886459
Alignment:
Q  22 atcacaacatcgcataaaaacatagcaaacaagcttgggt-----ttgttcttggtac-ggtaaatatctaggctgaccttcttcgatcggaagaagtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15886259 atcacaacatcgcataaaaacatagcaaacaagcttgggtccaggttgttcttggtaccggtaaatatctaggctgaccttcttcgatcggaagaagtaa 15886358  T
Q  116 gaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagta----acttttcaagggaatgatataaaggttcttatta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  15886359 gaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaagagacttttcaagggaatgatataaaggttcttatta 15886458  T
Q  212 a 212  Q
    |    
T  15886459 a 15886459  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 19935677 - 19935604
Alignment:
Q  105 ggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa 178  Q
    ||||||||||| ||||| || |||| ||| |||||||||   ||||||||||||||||| |||||||| |||||    
T  19935677 ggaagaagtaaaaaagcgacgttcaatttcatcaaagatcgcatttggaagaaaattaactcatggagcagtaa 19935604  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 26368802 - 26368872
Alignment:
Q  108 agaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa 178  Q
    |||||||||||||||||||||   ||||| ||||| |  |||||||| || |||||||| |||||||||||    
T  26368802 agaagtaagaaagcaactttcgagtttattaaagacagaatttggaaaaagattaattcctggagtagtaa 26368872  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 17779614 - 17779544
Alignment:
Q  108 agaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa 178  Q
    ||||||||||||||||||||| | ||||| |||||||  |||||||| || |||||||| |||||||||||    
T  17779614 agaagtaagaaagcaactttcgggtttattaaagatagaatttggaaaaagattaattcctggagtagtaa 17779544  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 5580231 - 5580322
Alignment:
Q  87 ggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa 178  Q
    |||| |||||||  ||| ||||||||||| ||||| || |||| ||| |||||||||   ||||||||||||||||| |||||||| |||||    
T  5580231 ggcttaccttctatgattggaagaagtaaaaaagcgacgttcaatttcatcaaagatcgcatttggaagaaaattaactcatggagcagtaa 5580322  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 16983862 - 16983932
Alignment:
Q  105 ggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtag 175  Q
    |||||||||||||||| |||||| | ||| || || |||| ||||||||| ||||||||||| ||||||||    
T  16983862 ggaagaagtaagaaagaaacttttaatttcattaaggataggatttggaacaaaattaattcgtggagtag 16983932  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 34671961 - 34672002
Alignment:
Q  101 gatcggaagaagtaagaaagcaactttcagttttatcaaaga 142  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  34671961 gatcggaagaagtaagaaatcaactttcaattttatcaaaga 34672002  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 80235 - 80333
Alignment:
Q  77 taaatatctaggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtag 175  Q
    |||||||||||||| ||| | |  |||  |||||||||| || || || |||| ||||||||||||| | ||||||||||| || ||||| ||||||||    
T  80235 taaatatctaggcttaccgtatatgattagaagaagtaaaaaggcgacgttcaattttatcaaagatcatatttggaagaagataaattcttggagtag 80333  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 39219517 - 39219551
Alignment:
Q  144 aagatttggaagaaaattaattcatggagtagtaa 178  Q
    ||||| |||||||||||||||||||||||||||||    
T  39219517 aagatatggaagaaaattaattcatggagtagtaa 39219551  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 23431137 - 23431065
Alignment:
Q  106 gaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa 178  Q
    |||||||||||||  | ||||| ||||| |||||||||   | ||||| |||||||||||| |||||||||||    
T  23431137 gaagaagtaagaagtccacttttagtttaatcaaagatctaagttggaggaaaattaattcttggagtagtaa 23431065  T

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