View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3627_low_14 (Length: 227)
Name: NF3627_low_14
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2524648 - 2524429
Alignment:
| Q |
7 |
atcctcactttcaaatttcaacatgtatgcatttttagctgccacagaatttcaccatgcaccattacttattatacgaatatgaccaaccgtatcctga |
106 |
Q |
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| T |
2524648 |
atcctcactttcaaatttcaacatgtatgcatttttagctgccacagaatttcaccatgcaccattacttattatacgaatatgaccaaccgtatcctga |
2524549 |
T |
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| Q |
107 |
gtacaatgtccatgttgaaaatgttctagcttaaatattggagatatcttacatcaatcatcagtgtcaagatgtgtttaaccaccaagttatccatctt |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2524548 |
gtacaatgtccatgttgaaaatgttctagctt-aatattggagatatcttacatcaatcatcagtgtcaagatgtgtttaaccaccaagttatccatctt |
2524450 |
T |
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| Q |
207 |
agaaagagaaacataagcaat |
227 |
Q |
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||||||||||||||||||||| |
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| T |
2524449 |
agaaagagaaacataagcaat |
2524429 |
T |
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