View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3627_low_16 (Length: 217)
Name: NF3627_low_16
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 5183714 - 5183522
Alignment:
| Q |
10 |
aggagcagagaagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaa |
109 |
Q |
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|||| |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5183714 |
aggaccagacaagtaattatgtgatagattcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaa |
5183615 |
T |
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| Q |
110 |
tccaatccagtcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttcatcc |
202 |
Q |
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| T |
5183614 |
tccaatccagtcatgatctttagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttcatcc |
5183522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 5174367 - 5174184
Alignment:
| Q |
15 |
cagagaagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaa |
114 |
Q |
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| T |
5174367 |
cagacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaa |
5174268 |
T |
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| Q |
115 |
tccagtcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttc |
198 |
Q |
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| T |
5174267 |
tccagtcatattctctagaactatacccttgtaagagtattcattgtgctttgttctgaactccacttcaaattgtagttcttc |
5174184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 5197103 - 5196940
Alignment:
| Q |
20 |
aagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccag |
119 |
Q |
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| T |
5197103 |
aagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccag |
5197004 |
T |
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| Q |
120 |
tcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttc |
183 |
Q |
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|||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
5197003 |
tcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttc |
5196940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 4841160 - 4841334
Alignment:
| Q |
20 |
aagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccag |
119 |
Q |
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| T |
4841160 |
aagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaatccaatccag |
4841259 |
T |
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| Q |
120 |
tcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagat |
194 |
Q |
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|||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
4841260 |
tcataatctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagat |
4841334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 4855656 - 4855846
Alignment:
| Q |
10 |
aggagcagagaagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaa |
109 |
Q |
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|||| |||| ||||||||||||||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
4855656 |
aggaccagacaagtgattatgtgataggttcaaggctctaactggttgaaggtgaccaatttgagaagggatgacacctgttaggttattccatgataaa |
4855755 |
T |
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| Q |
110 |
tccaatccagtcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttcat |
200 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
4855756 |
tccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttcaaattgtagatcttcat |
4855846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 5215258 - 5215068
Alignment:
| Q |
10 |
aggagcagagaagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaa |
109 |
Q |
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|||| |||| ||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
5215258 |
aggaccagacaagtgattatgtgataggttcaaggctctaacttgttgaaggtgaccaatttgagaagggatgagacctgttaggttattccatgataaa |
5215159 |
T |
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| Q |
110 |
tccaatccagtcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttcat |
200 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||| ||| ||||||| ||||||||||| |
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| T |
5215158 |
tccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacctcaaattgtagatcttcat |
5215068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 5161421 - 5161258
Alignment:
| Q |
20 |
aagtgattatgtgataggttcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccag |
119 |
Q |
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||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
5161421 |
aagtgattatgtgataggttcaaggctaaaacttgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatccag |
5161322 |
T |
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| Q |
120 |
tcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttc |
183 |
Q |
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|||| ||||||| ||| |||| |||||||||||||||| |||||||||||| |||| |||||| |
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| T |
5161321 |
tcattttctctaggactttacctttgtaaaagtaatcattgtgctttgttctgaactccacttc |
5161258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 7143491 - 7143408
Alignment:
| Q |
96 |
tattgcatgataaatccaatccagtcatgatctctagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgca |
179 |
Q |
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|||||||||||||||||||||||||||| |||||||| | | || | | ||||||||| ||||||| ||||||||||||||||| |
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| T |
7143491 |
tattgcatgataaatccaatccagtcatcatctctaggattttagcgtcgtaaaagtactcatagttctttgttctaaactgca |
7143408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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