View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3627_low_3 (Length: 398)
Name: NF3627_low_3
Description: NF3627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3627_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 27695036 - 27694664
Alignment:
| Q |
19 |
gaagttaggaatctgtttgtgaaggcagaattcaggataagatactgttataatttgtgaagtgtagtttatggttttgacgatggttttcgaagagaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27695036 |
gaagttaggaatctgtttgtgaaggcagaattcaggataagatactgttataatttgtgaagtgtagtttatggttttgaggatggttttcgaagagaag |
27694937 |
T |
|
| Q |
119 |
ggaagctctaacaccgtttggttggtgtcggtgcagtatagttcataccaggaatcattgtggccacaccattgtggctgtcttcctatgagtctgaacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27694936 |
ggaagctctaacaccgtttggttggtgtcggtgcagtatagttcataccaggaatcattgtggccacaccattgtggctgtcttcctttgagtctgaacg |
27694837 |
T |
|
| Q |
219 |
ggaatcttatgaatggtccatgaataccatcacaacttgattctttgcattggtcatcatgaaaactagtttctgcaatttcaactgtaattaaaaagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27694836 |
ggaatcttatgaatggtccatgaataccatcacaacttgattctttgcatgggtcatcatgaaaactagtttccgcaatttcaactgtaattaaaaagca |
27694737 |
T |
|
| Q |
319 |
gaacaagaacacatggatgagagtttttaaccaaatagccatttcgaatgctgatcaatcaccatgtccatct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27694736 |
gaacaagaacacatggatgagagtttttaaccaaatagccatttcgaatgctgatcaatcaccatgtccatct |
27694664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University