View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_high_18 (Length: 357)
Name: NF3628_high_18
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 31604540 - 31604874
Alignment:
| Q |
17 |
atgttggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgcc |
116 |
Q |
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| T |
31604540 |
atgtaggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggatggtgtgttttcttgactgtgtacacatgcc |
31604639 |
T |
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| Q |
117 |
atgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgg |
216 |
Q |
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| T |
31604640 |
atgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgg |
31604739 |
T |
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| Q |
217 |
gtgtggttattcctgttaaccatagaacagctatcaacccactaccatatatttctgcatccataaactgcaacaaacaatgtat----atattcatata |
312 |
Q |
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| T |
31604740 |
gtgtggttattcctgttaaccatagaacagctatcaacccactaccatatatttctgcatccataaactgcaacaaacaatgtatattcatattcatata |
31604839 |
T |
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| Q |
313 |
tgcatctattattgatcaacattattgcactcatt |
347 |
Q |
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| T |
31604840 |
tgcatctattattgatcaacattattgcactcatt |
31604874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 31594288 - 31594626
Alignment:
| Q |
17 |
atgttggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgcc |
116 |
Q |
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| T |
31594288 |
atgtaggacatagaaacaaataggacttcgcagtgaagggtttgacatttcaagaagattgatcatggatggtatgttttcttgatcgtgtacacatgcc |
31594387 |
T |
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| Q |
117 |
atgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgg |
216 |
Q |
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| T |
31594388 |
atgagacgtagctcaatatctgaagctgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcacaatgg |
31594487 |
T |
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| Q |
217 |
gtgtggttattcctgttaaccatagaacagctatcaacccactaccatatatttctgcatccataaactgcaacaaacaatgtat--------atattca |
308 |
Q |
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||||| ||| |||||||| ||||| | |||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||| ||||||| |
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| T |
31594488 |
gtgtgattagtcctgttacccataccagagctatcaacccactaccatatgtttcttgatccagaaactgcaacaaataatgtatacatataaatattca |
31594587 |
T |
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| Q |
309 |
tatatgcatctattattgatcaacattattgcactcatt |
347 |
Q |
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| T |
31594588 |
agtatgcagctactattgatcaacattattgcactcatt |
31594626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 31578761 - 31579097
Alignment:
| Q |
17 |
atgttggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgcc |
116 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
31578761 |
atgtaggacatagaaacaaattggatttttcaatgaagggcttgacatttcaagaagattgataatggatggtgtgttttcttgactgtgtatacatgcc |
31578860 |
T |
|
| Q |
117 |
atgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgg |
216 |
Q |
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| T |
31578861 |
aagatacgaagttcaatatctgaagttgattgttcaatggttcttctcctatttaaggataagtacctcttagatggatcatataggaatttcacaatgg |
31578960 |
T |
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| Q |
217 |
gtgtggttattcctgttaaccatagaacagctatcaacccactaccatatatttctgcatccataaactgcaacaaa-ca-atgtatat----attcata |
310 |
Q |
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| T |
31578961 |
gtgttgtggctgctgttatccatattaaagctatcaacccaataccatatgattcttcatctataagctgcaacaaatcacatatatattcacattcaaa |
31579060 |
T |
|
| Q |
311 |
tatgcatctattattgatcaacattattgcactcatt |
347 |
Q |
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|||| | ||||||||||| ||||| |||||||||||| |
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| T |
31579061 |
tatgtaactattattgattaacatcattgcactcatt |
31579097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31563407 - 31563610
Alignment:
| Q |
17 |
atgttggacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattgataatggttggtgtgttttcttgactgtgtacacatgcc |
116 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||| |
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| T |
31563407 |
atgtaggacatagaaacaaataggattctccaatgaagggtttgacatttcaagaagattaataatggatggtgtgttttcttgactatgtatacatgcc |
31563506 |
T |
|
| Q |
117 |
atgagacgtagctcaatatctgaagttgattgttcaatggttcttctcttatttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgg |
216 |
Q |
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||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||| |||||||||||||||| ||||| |
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| T |
31563507 |
atgagacttagttcggtatctgaagttgattgttcaatggttcttctcctatttaaggataagtatttcttagatggatcatataggaatttcacaatgg |
31563606 |
T |
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| Q |
217 |
gtgt |
220 |
Q |
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|||| |
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| T |
31563607 |
gtgt |
31563610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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