View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_high_20 (Length: 343)
Name: NF3628_high_20
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 14166671 - 14167005
Alignment:
| Q |
1 |
caatgtagcaaaattaaattcatcgcagaaaaatgtgagagatctaccttttcatagtacttaacatgatcattgaagctacggatggtggtatacaatg |
100 |
Q |
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| T |
14166671 |
caatgtatcaaaattaaattcatcgcagaaaaatgtgagagatctaccttttcatagtacttaacatgatcattgaagctacggatggtggtatacaatg |
14166770 |
T |
|
| Q |
101 |
ccttctgaaattcatcagatccttcatccaacagcttctgtaaagattaaacggacacaaatttaaataacgagttataatatcataannnnnnnaatat |
200 |
Q |
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| T |
14166771 |
ccttctgaaattcatcagatccttcatccaacagcttctgtaaagattaaacggacacaaatttaaataacgaatcataatatcataatttttttaatat |
14166870 |
T |
|
| Q |
201 |
cgtaatctttttattatataccttagtgatggaagtaccatgagtctctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaag |
300 |
Q |
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| T |
14166871 |
cgtaatctttttattatataccttagtgatggaagtaccatgagtctctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaag |
14166970 |
T |
|
| Q |
301 |
atcctaatggcttcttcatgacttcctttcttctc |
335 |
Q |
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| T |
14166971 |
atccttatggcttcttcatggcttcctttcttctc |
14167005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 14173880 - 14173968
Alignment:
| Q |
247 |
tctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatcctaatggcttcttcatgacttcctttcttctc |
335 |
Q |
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| T |
14173880 |
tctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcatgatttccttttttctc |
14173968 |
T |
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