View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_high_23 (Length: 316)

Name: NF3628_high_23
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_high_23
NF3628_high_23
[»] chr2 (1 HSPs)
chr2 (17-309)||(45218063-45218355)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 45218355 - 45218063
Alignment:
Q  17 cttgtaactataaaatagtgacatctttttctacacatatataacacagcatttactgctacattacatcatttacaaacttcctctttcttattgttaa 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45218355 cttgtaactataaaatagtgacatctttttctactcatatataacacagcatttactgctacattacatcattcacaaacttcctctttcttattgttaa 45218256  T
Q  117 accaaactttgatcacatatacagaaagaaaatcattgcatattttcctaccatatggaccttctaagattagagccatgtttatctaataatttgaaca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45218255 accaaactttgatcacatatacagaaagaaaatcattgcatattttcctaccatatggaccttctaagattagagccatgtttatctaataatttgaaca 45218156  T
Q  217 tctcattttctgagaagagacaaacagaaaatgaagagaaaaaacatcttctactggatttaactcttcctagtaaagattcttgtgatgatg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45218155 tctcattttctgagaagagacaaacagaaaatgaagagaaaaaacatcttctactggatttaactcttcctagtaaagattcttgtgatgatg 45218063  T

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