View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3628_high_26 (Length: 302)
Name: NF3628_high_26
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 52432252 - 52431983
Alignment:
| Q |
13 |
aatatccagcagagtagtagtaataatgctcattgtcttcctaatctagaacgaggtgggagagacccagcaagggacatcttatggtgttgtgttagaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52432252 |
aatatccagcagagtagtagtaataatgctcattgtcttcct--tctagaacgaggtgggagagacccagcaagggacatcttatggtgttgtgttagaa |
52432155 |
T |
|
| Q |
113 |
agagtgaatgtgggtttattcttgcccaaacgatttggaagtttgcaaagatgtcaacaattgaacgataggcaaatgctttattcttgtccatnnnnnn |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52432154 |
agagtgaatgtgggtttattcttgcccaaacgatttggaagtttgcaaagatgtcaacaattgaacgataggcaaatgctttattcttgtccataaaaaa |
52432055 |
T |
|
| Q |
213 |
ntggaatcaagtgatatttgagagtagttttcaaattttagtagattttatttaatttcgctatttaggtgt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52432054 |
atggaatcaagtgatatttgagagtagttttcaaattttagtagattttatttaatttcgctatttaggtgt |
52431983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University