View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_high_27 (Length: 299)
Name: NF3628_high_27
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 127 - 284
Target Start/End: Complemental strand, 594845 - 594675
Alignment:
| Q |
127 |
aaaattgataaacttgaacaaataaagcattgaagatttgaagaaggtatgtttcaacgactagctgacttggaattgatttttatagataataatattc |
226 |
Q |
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| T |
594845 |
aaaattgataaacttgaacaaataaagcattgaagatttgaagaaggtacgtttcaacgactagctgacttggaattgatttttatagataataatattc |
594746 |
T |
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| Q |
227 |
aatctcttacctgactgacga-------------tggttgaatgagttaaaaatttagagtttgagaaaat |
284 |
Q |
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| T |
594745 |
aatttcttacctgactcgcgaataataatttatttggttgaatgagttaaaaatttagagtttgagaaaat |
594675 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 594954 - 594879
Alignment:
| Q |
18 |
tgtggaggcgatttttatttgcattttctagatgatcattgaaaagaaaactttattaaataaactgatacaatgg |
93 |
Q |
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||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
594954 |
tgtggaggcgatttttatttgtattttctatatgatcgttgaaaagaaaactttattaaataaactgatacaatgg |
594879 |
T |
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