View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_high_29 (Length: 281)

Name: NF3628_high_29
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_high_29
NF3628_high_29
[»] chr7 (2 HSPs)
chr7 (1-264)||(5952950-5953213)
chr7 (13-264)||(13583281-13583533)
[»] chr6 (4 HSPs)
chr6 (4-264)||(7022560-7022820)
chr6 (4-264)||(26292349-26292611)
chr6 (4-260)||(34252052-34252310)
chr6 (15-253)||(10570400-10570639)
[»] chr8 (2 HSPs)
chr8 (4-264)||(15917318-15917578)
chr8 (4-136)||(8567670-8567802)
[»] chr1 (3 HSPs)
chr1 (4-264)||(5171000-5171260)
chr1 (4-260)||(6770757-6771018)
chr1 (7-160)||(33931552-33931707)
[»] chr3 (3 HSPs)
chr3 (4-264)||(55429017-55429278)
chr3 (4-261)||(29018675-29018931)
chr3 (13-253)||(17065241-17065474)
[»] chr4 (4 HSPs)
chr4 (5-264)||(19816408-19816667)
chr4 (77-264)||(21374864-21375052)
chr4 (187-264)||(31619229-31619306)
chr4 (6-47)||(1804489-1804530)
[»] chr2 (3 HSPs)
chr2 (2-262)||(29763027-29763290)
chr2 (143-231)||(16091065-16091153)
chr2 (4-41)||(9992988-9993025)
[»] chr5 (4 HSPs)
chr5 (4-212)||(35946818-35947027)
chr5 (4-158)||(28175138-28175284)
chr5 (175-226)||(28175088-28175139)
chr5 (4-56)||(6642291-6642343)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5952950 - 5953213
Alignment:
Q  1 cataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  5952950 cataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatca 5953049  T
Q  101 tacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattat 200  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5953050 tacgcaacacgaaggccatgaaaaatgacatacaattcggctgccaaacaagaagtaataccacaaaattcagaaaaacccagcaaccaatcaccattat 5953149  T
Q  201 tgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5953150 tgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 5953213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 13583533 - 13583281
Alignment:
Q  13 aggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacga 112  Q
    ||||||| ||| ||| |||||| ||||||||| || | | |||| ||||||||| ||||||||||||||| || |||| ||  ||||||| |||| ||||    
T  13583533 aggatgacgaggttgaacatccaacatgattagataatgagccaccctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatacga 13583434  T
Q  113 aggccatgaaaaatgacatacaattcgaccgccaaacaagaagt-aatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaata 211  Q
    |||| ||||||  || ||||||||||  |    || |||||| | ||||| ||||||  |||  |||| || |||| ||| ||||||||||||||| |||    
T  13583433 aggctatgaaaggtggcatacaattcagctctgaagcaagaaataaataccacaaaaaccagtgaaactcaacaactaattaccattattgtttctcata 13583334  T
Q  212 agacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||| ||||||||| |||| ||| | ||||||||||| ||||||  ||||||||    
T  13583333 agatctccaaaacgtgatatcctatgattagaaagaaaactactatcaacatt 13583281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 7022820 - 7022560
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  7022820 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatac 7022721  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 203  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  7022720 gcaatacgaaggccatgaaaaatgacatacaattcggccgccaagcaagaagtaataccacaaaatccaaaaaaacccagcaaccaatcaccattattgt 7022621  T
Q  204 ttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  7022620 ttctaataagacctccaaaacctgatctttcaggattagaaagagaactaccgtcaacatt 7022560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 26292349 - 26292611
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    |||||||||||||||| |||||||||||  ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  26292349 aggagcatgaggatgacgagattggacactcgacatgtttaaatcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatac 26292448  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattc--agaaaaacccagcaaccaatcaccattatt 201  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |  | ||||||||||||||||||||||||||||    
T  26292449 gcaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatccataaaaaaacccagcaaccaatcaccattatt 26292548  T
Q  202 gtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||    
T  26292549 gtttctaataagacctccaaaaactgatcttccatgattagaaagagaaataccgtcaacatt 26292611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 34252310 - 34252052
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccga--catgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcat 101  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||| | ||||||||||||||| ||| ||| |||||||    
T  34252310 aggagcatgaggatgataagattggacatccgagacatgattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcat 34252211  T
Q  102 acgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattatt 201  Q
    ||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  34252210 acgtaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatacagaaaaatccagcaaccaatcaccattatt 34252111  T
Q  202 gtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaa 260  Q
    ||||||||||| |||||||||||| |||||  ||| |||||||||||||||||||||||    
T  34252110 gtttctaataaaacctccaaaacccgatctttcagaattagaaagagaactaccgtcaa 34252052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 10570639 - 10570400
Alignment:
Q  15 gatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaag 114  Q
    ||||| ||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  10570639 gatgacgaggttggatatccgacataattaaattaagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaag 10570540  T
Q  115 gccatgaaa-aatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataag 213  Q
     ||||||||   |  |||||||||||||| |||| ||| || |||||| ||||||   ||||| ||||| ||||||||||   |||| ||||||||||||    
T  10570539 accatgaaattgtttcatacaattcgaccaccaagcaaaaaataataccacaaaaactagaaagacccaacaaccaatcattgttatggtttctaataag 10570440  T
Q  214 acctccaaaacctgatctcccaggattagaaagagaacta 253  Q
    ||||||||||||| || | |||||||||||||||||||||    
T  10570439 acctccaaaaccttatattccaggattagaaagagaacta 10570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 15917318 - 15917578
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  15917318 aggagcatggggatgatgagattggacatccgacatgattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatac 15917417  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 203  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||  | |||||||||||||||||||||||||| | |    
T  15917418 gcaatacgaaggccatgaaaaatgacatacaatttggccgccaagcaagaagtaataccacaaaatctataaaaacccagcaaccaatcaccattacttt 15917517  T
Q  204 ttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15917518 ttcaaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 15917578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 8567670 - 8567802
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    |||||||||| ||||||||| || ||||||||||||||||| |||||  |||| | ||||||||||||||||||||||||||   || ||||||||||||    
T  8567670 aggagcatgaagatgatgaggttcgacatccgacatgattagatcaaaagccaccatagaatctgattcaagaataatgttcccttgacccgcatcatac 8567769  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaat 136  Q
    |||| ||||||||| ||||||||||||||||||    
T  8567770 gcaatacgaaggccgtgaaaaatgacatacaat 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 5171260 - 5171000
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||| |||||||||||||    
T  5171260 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatac 5171161  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 203  Q
    |||| || |||||||||||||||| ||||||||||| |||||||  |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  5171160 gcaatacaaaggccatgaaaaatggcatacaattcggccgccaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgt 5171061  T
Q  204 ttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
      |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5171060 cactaataagacctccaaaacctgatcttccaggattagaaagagaactaccgtcaacatt 5171000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 6771018 - 6770757
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  6771018 aggagcatgaggatgatgagattcgacattcgacatgattaaatcaagagccatcctataatttgattcaagaataatgttcatgtgacccgcatcatac 6770919  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcag-----aaaaacccagcaaccaatcaccatt 198  Q
    |||| | |||| |||| ||||||| ||||||||||| ||||||| ||||||||||||| |||||||  ||     |||||||||||||||||||||||||    
T  6770918 gcaatatgaagaccataaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatctagaagaaaaaaacccagcaaccaatcaccatt 6770819  T
Q  199 attgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaa 260  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6770818 attgtttcttataagacctccaaaacctgatctcccatgatcagaaagataactaccgtcaa 6770757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 33931552 - 33931707
Alignment:
Q  7 agcatgaggatgatgagattggacatccgacatgattaaatcaa--gggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacg 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | | ||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  33931552 agcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacg 33931651  T
Q  105 caacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaata 160  Q
    ||| |||||| |||| ||||||| ||||||||||| ||| ||||||||||||||||    
T  33931652 caatacgaagaccataaaaaatggcatacaattcggccgtcaaacaagaagtaata 33931707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 55429017 - 55429278
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55429017 aggagcatgaggatgatgagattcgacatccgacatgattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatac 55429116  T
Q  104 gcaacacgaaggccatg-aaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattg 202  Q
    |||| ||||||||| || ||||||| ||||||||||  | ||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  55429117 gcaatacgaaggccgtgcaaaaatggcatacaattcagctgccaagcaggaagtaataccacaaaatccagaaaaacccagcaaccagtcaccattattg 55429216  T
Q  203 tttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55429217 tttctaataagacctccaaaacctgatctcccaggatttgaaagagaactaccgtcaacatt 55429278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 29018675 - 29018931
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| | || | |||||||| |||||||||||||||||||||| ||||||||| ||    
T  29018675 aggagcatgaggatgatgaggttggacatccgacatgattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacac 29018774  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 203  Q
     ||| ||||||||||||||||||| ||||||||| | | ||||| ||||||||||||| |||||| ||||||||||  | || ||||||||||||||| |    
T  29018775 acaatacgaaggccatgaaaaatggcatacaatttggcagccaagcaagaagtaataccacaaaaatcagaaaaacaaaacatccaatcaccattatt-t 29018873  T
Q  204 ttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaac 261  Q
    || | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29018874 ttttgataagacctccaaaacctgatcttccaagattagaaagagaactaccgtcaac 29018931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 17065241 - 17065474
Alignment:
Q  13 aggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacga 112  Q
    ||||||||||| ||||| || |||||| ||||||||||| | || ||||||||| |||||||||||       |||||  |  ||||||| | |||||||    
T  17065241 aggatgatgaggttggaaattcgacataattaaatcaagagtcaccctagaatcggattcaagaat-------atgtgatcatcatcataagtaacacga 17065333  T
Q  113 aggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataa 212  Q
    ||| |||  |||||| ||||||||||  | |||||  || || |||||| | |||| ||| | ||||||| ||||||||||| |||| |  ||||  |||    
T  17065334 aggtcatataaaatggcatacaattctgctgccaagtaaaaaataataccataaaaatcaaagaaacccaacaaccaatcactattactacttcttttaa 17065433  T
Q  213 gacctccaaaacctgatctcccaggattagaaagagaacta 253  Q
    ||||  |||||||| |||| |||  |||||| |||||||||    
T  17065434 gaccgtcaaaaccttatcttccaatattagatagagaacta 17065474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 19816408 - 19816667
Alignment:
Q  5 ggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacg 104  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  19816408 ggagcatgaggatgatgagattcaacatccgacatgattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatg 19816507  T
Q  105 caacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtt 204  Q
    ||| ||||||||||||||||||  ||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  19816508 caatacgaaggccatgaaaaatagcatacaattcagccgccaagcaagaagtaataccacaaaatccagaaaaaccccggaaccaatcaccattattgtt 19816607  T
Q  205 tctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  19816608 tctaataagacctccaaaacctgatcttccagaattagaaagagaactatcgtcaacatt 19816667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 21375052 - 21374864
Alignment:
Q  77 ataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaa 176  Q
    ||||||||| |||||||||||| ||| |||| |||||||| |||||||||| ||||||||| | ||| |||  |||||||||||| ||||||||||||||    
T  21375052 ataatgttcctgtggcccgcattatatgcaatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaataccacaaaattcagaaa 21374953  T
Q  177 aacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatctccca-ggattagaaagagaactaccgtcaacatt 264  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  21374952 aacccaacaaccaatcaccgttattgtttctaataaaacctccaaaacctgatcttccattaattagaaagagaactaccgtcaacatt 21374864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 31619229 - 31619306
Alignment:
Q  187 ccaatcaccattattgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacatt 264  Q
    ||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| ||| ||||||| ||||||||||    
T  31619229 ccaatcaccattattgtttcttataagacctccaaaatccggtcttcatggattaaaaatagaactatcgtcaacatt 31619306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 1804530 - 1804489
Alignment:
Q  6 gagcatgaggatgatgagattggacatccgacatgattaaat 47  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  1804530 gagcatgaagatgatgagcttggacatccgacataattaaat 1804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 29763290 - 29763027
Alignment:
Q  2 ataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcat 101  Q
    |||||||||| |||||||| |  ||||||||| ||| ||||||||||||| |||| ||||| |||  ||||||||||||||||| |||| ||| ||||||    
T  29763290 ataggagcataaggatgataaagttggacatctgacgtgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcat 29763191  T
Q  102 acgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaat---acaacaaaattcagaaaaacccagcaaccaatcaccatt 198  Q
    ||| || ||||||| |||||||||||||||| |||||   ||| || |||||||||||   || |||||| || | |||||||| ||| |||||||||||    
T  29763190 acgtaatacgaaggtcatgaaaaatgacatataattctgtcgctaagcaagaagtaataaaaccacaaaaatccggaaaacccaacaatcaatcaccatt 29763091  T
Q  199 attgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaaca 262  Q
    ||||||||| |||||||||| ||  || |||||  ||||||| |||||||||||| ||||||||    
T  29763090 attgtttcttataagacctcaaattcccgatctttcaggattggaaagagaactatcgtcaaca 29763027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 16091153 - 16091065
Alignment:
Q  143 gccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 231  Q
    |||||| |||||||||||| |||||| ||| | | ||||| |||  ||||||||| ||||||||| |||||||||||||||||| ||||    
T  16091153 gccaaataagaagtaataccacaaaaatcaaagatacccaacaataaatcaccatcattgtttcttataagacctccaaaacctaatct 16091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 9992988 - 9993025
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatga 41  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9992988 aggagcatgaggatgataagattggacatccgacatga 9993025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 35946818 - 35947027
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    ||||||||  |||||||||  |||| ||||| ||||||||| |||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  35946818 aggagcatatggatgatgatgttgggcatccaacatgattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcatac 35946917  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcag-aaaaacccagcaaccaatcaccattattg 202  Q
    |||| || |||| | ||||||||||||| ||||||| ||| ||||||||||||||||| ||||||  ||| |||||| || |||||||||| |||||||     
T  35946918 gcaatacaaaggtcttgaaaaatgacatgcaattcggccgtcaaacaagaagtaataccacaaaaaccagaaaaaacgcaacaaccaatcatcattatta 35947017  T
Q  203 tttctaataa 212  Q
    ||||| ||||    
T  35947018 tttcttataa 35947027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 28175284 - 28175138
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 103  Q
    ||||||||||  |||||||| ||| |||||||||| ||||| |||||| |||| ||        |||||||||||||||||||| |  || |||||||||    
T  28175284 aggagcatgaaaatgatgaggttgaacatccgacaagattagatcaagagccaccc--------gattcaagaataatgttcatattccctgcatcatac 28175193  T
Q  104 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaa 158  Q
     ||| ||||||| ||||||||||| |||| |||| ||||| ||| |||| |||||    
T  28175192 acaagacgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa 28175138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 28175139 - 28175088
Alignment:
Q  175 aaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacct 226  Q
    |||||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  28175139 aaaacccaacaacccatcaccattattgtttcttgtaagacctctaaaacct 28175088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 6642343 - 6642291
Alignment:
Q  4 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggcca 56  Q
    ||||| || ||||| ||||| |||||||||| |||||||||||||||| ||||    
T  6642343 aggagaataaggataatgaggttggacatccaacatgattaaatcaagagcca 6642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University