View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_high_37 (Length: 250)

Name: NF3628_high_37
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_high_37
NF3628_high_37
[»] chr8 (5 HSPs)
chr8 (1-235)||(10680224-10680467)
chr8 (179-231)||(10681926-10681978)
chr8 (40-74)||(10680189-10680223)
chr8 (187-235)||(17963460-17963508)
chr8 (177-222)||(4390754-4390799)
[»] chr1 (9 HSPs)
chr1 (161-235)||(46683595-46683670)
chr1 (176-235)||(2228097-2228156)
chr1 (176-235)||(46683379-46683438)
chr1 (176-235)||(47477311-47477370)
chr1 (188-224)||(680662-680698)
chr1 (176-232)||(5153319-5153375)
chr1 (176-235)||(47478620-47478679)
chr1 (188-226)||(49617161-49617199)
chr1 (176-226)||(51745846-51745896)
[»] chr5 (6 HSPs)
chr5 (176-234)||(34002964-34003022)
chr5 (176-226)||(13828928-13828978)
chr5 (187-234)||(37987514-37987561)
chr5 (188-223)||(13614818-13614853)
chr5 (188-226)||(13827617-13827655)
chr5 (176-226)||(19685674-19685724)
[»] chr4 (13 HSPs)
chr4 (176-235)||(4349932-4349991)
chr4 (176-232)||(3334690-3334746)
chr4 (176-235)||(55515551-55515611)
chr4 (188-235)||(3087944-3087991)
chr4 (176-234)||(3086437-3086495)
chr4 (176-226)||(10224431-10224481)
chr4 (176-226)||(23356630-23356680)
chr4 (176-225)||(55514755-55514804)
chr4 (190-226)||(33953071-33953107)
chr4 (176-226)||(19137819-19137869)
chr4 (176-226)||(23357942-23357992)
chr4 (190-235)||(25728727-25728772)
chr4 (177-225)||(10231220-10231268)
[»] chr2 (6 HSPs)
chr2 (176-235)||(14146956-14147015)
chr2 (176-233)||(14145593-14145650)
chr2 (188-224)||(34880445-34880481)
chr2 (176-222)||(36626423-36626469)
chr2 (176-221)||(33373168-33373213)
chr2 (176-221)||(34506375-34506420)
[»] chr7 (4 HSPs)
chr7 (179-232)||(43962768-43962821)
chr7 (190-235)||(18655135-18655180)
chr7 (176-223)||(46484321-46484368)
chr7 (190-226)||(46419362-46419398)
[»] scaffold0586 (2 HSPs)
scaffold0586 (177-226)||(7638-7687)
scaffold0586 (177-226)||(8684-8733)
[»] scaffold1234 (1 HSPs)
scaffold1234 (176-226)||(1801-1851)
[»] chr3 (7 HSPs)
chr3 (176-225)||(24742776-24742825)
chr3 (187-226)||(23211332-23211371)
chr3 (176-221)||(13102402-13102447)
chr3 (190-235)||(33854406-33854451)
chr3 (188-224)||(39195609-39195645)
chr3 (188-224)||(39197830-39197866)
chr3 (188-224)||(51970057-51970093)
[»] scaffold0012 (1 HSPs)
scaffold0012 (188-224)||(191199-191235)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10680224 - 10680467
Alignment:
Q  1 gtggttgtccagtccattgcttcttcaaaatgttgactgctttgtcccccgctatggtgcggtacaaaagaaggacatattttcaatatttgtactgctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10680224 gtggttgtccagtccattgcttcttcaaaatgttgactgctttgtcccccgctatggtgcggtacaaaagaaggacatatttccaatatttgtactgctt 10680323  T
Q  101 tgtgtttcatatttaaacaaatcaaacataccaaaagaggaattaaagaannnnnnnnnctgccctagtttttgcc----------aaaaatacctcact 190  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||         ||| |||||||||||||          ||||||||||||||    
T  10680324 tgtgtttcatatttaaacaaatcaaacacaccaaaagaggaattaaagaa-ttttttttctgtcctagtttttgccaaaaaaacataaaaatacctcact 10680422  T
Q  191 ttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  10680423 ttttcgaaaaattgcataaatgttctactttttcaggggtctctg 10680467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 10681978 - 10681926
Alignment:
Q  179 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtc 231  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  10681978 aaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtc 10681926  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 10680189 - 10680223
Alignment:
Q  40 ctttgtcccccgctatggtgcggtacaaaagaagg 74  Q
    |||||||||||||||||||||||||||||||||||    
T  10680189 ctttgtcccccgctatggtgcggtacaaaagaagg 10680223  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 17963508 - 17963460
Alignment:
Q  187 cactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||    
T  17963508 cactttttcgaaaaattgcacaaatgccctactttttcagatgtctctg 17963460  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 4390754 - 4390799
Alignment:
Q  177 aaaaatacctcactttttcgaaaaattgcataaatgctctactttt 222  Q
    |||||| |||||||||| | ||||||||||||||||| ||||||||    
T  4390754 aaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 4390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 46683670 - 46683595
Alignment:
Q  161 tgccctagtttttgccaaaaa-tacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683670 tgccctagtttttgtcaaaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 2228156 - 2228097
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  2228156 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttaaggggtctctg 2228097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 46683379 - 46683438
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683379 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683438  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 47477311 - 47477370
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  47477311 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttcaggggtctctg 47477370  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 680662 - 680698
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    |||||||||||||||||||||||||| ||||||||||    
T  680662 actttttcgaaaaattgcataaatgccctactttttc 680698  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 5153375 - 5153319
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 232  Q
    ||||||||||| ||||||| ||||||||||||||||   ||||||||||||| ||||    
T  5153375 caaaaataccttacttttttgaaaaattgcataaatatcctactttttcaggtgtct 5153319  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 47478679 - 47478620
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||| | | |||||||||||||||||| |||||  ||||||||| |||||||||||    
T  47478679 caaaaatatcccgctttttcgaaaaattgcagaaatgtcctacttttttaggggtctctg 47478620  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 49617161 - 49617199
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  49617161 actttttcgaaaaattgcacaaatgccctactttttcag 49617199  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 51745846 - 51745896
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  51745846 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 51745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 34002964 - 34003022
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 234  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  34002964 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttcaggggtctct 34003022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 13828978 - 13828928
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  13828978 caaaaatgccccactttttcgaaaaattgcaaaaatgctctactttttcag 13828928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 37987514 - 37987561
Alignment:
Q  187 cactttttcgaaaaattgcataaatgctctactttttcaggggtctct 234  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  37987514 cactttttcgaaaaattgcagaaatgccctactttttcaggagtctct 37987561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 13614818 - 13614853
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctacttttt 223  Q
    |||||||||||||||||||||||||| |||||||||    
T  13614818 actttttcgaaaaattgcataaatgccctacttttt 13614853  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 13827617 - 13827655
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  13827617 actttttcgaaaaattgcaaaaatgccctactttttcag 13827655  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 19685724 - 19685674
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || ||||||| | ||||||||||||||||| ||||||||||||    
T  19685724 caaaaatgccccacttttgcaaaaaattgcataaatgccctactttttcag 19685674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 4349932 - 4349991
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  4349932 caaaaatatctcactttttcgaaaaattgcagaaatgtcctactttttcaggggtctctg 4349991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 3334746 - 3334690
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 232  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||    
T  3334746 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcatgggtct 3334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 55515611 - 55515551
Alignment:
Q  176 caaaaatacctcactttttc-gaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||| ||||||||  ||||||||||| |||||| |||||||||||||||||||||    
T  55515611 caaaaataccccactttttttgaaaaattgcaaaaatgccctactttttcaggggtctctg 55515551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 3087991 - 3087944
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  3087991 actttttcgaaaaattgcagaaatgccatactttttcaggggtctctg 3087944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 3086437 - 3086495
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 234  Q
    ||||||||||  | ||||||||||||||||| |||||| ||| ||||||||||||||||    
T  3086437 caaaaataccctattttttcgaaaaattgcagaaatgccctattttttcaggggtctct 3086495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 10224431 - 10224481
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  10224431 caaaaatgccccactttttcgaaaaattgcgtaaatgccctactttttcag 10224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 23356630 - 23356680
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  23356630 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 23356680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 55514755 - 55514804
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 225  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||    
T  55514755 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttca 55514804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 33953107 - 33953071
Alignment:
Q  190 tttttcgaaaaattgcataaatgctctactttttcag 226  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33953107 tttttcgaaaaattgcataaatgccctactttttcag 33953071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 19137869 - 19137819
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  19137869 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 19137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 23357992 - 23357942
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || || ||||||||||||||||| |||||| ||||||||||||    
T  23357992 caaaaatgccccattttttcgaaaaattgcaaaaatgccctactttttcag 23357942  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 25728727 - 25728772
Alignment:
Q  190 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    ||||||||||||||||| ||||   |||||||||||||||||||||    
T  25728727 tttttcgaaaaattgcagaaatatcctactttttcaggggtctctg 25728772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 10231268 - 10231220
Alignment:
Q  177 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 225  Q
    |||||| || |||||||||||||||||||  |||||| |||||||||||    
T  10231268 aaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttca 10231220  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 14147015 - 14146956
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  14147015 caaaaataccccactttttcgaaaaatggcagaaatgccctactttttcaggggtctctg 14146956  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 14145593 - 14145650
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctc 233  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||    
T  14145593 caaaaataccccactttttcgaaaaattgcagaaatggcctactttttcaggggtctc 14145650  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 34880481 - 34880445
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34880481 actttttcgaaaaattgcataaatgccctactttttc 34880445  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 36626423 - 36626469
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttt 222  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||    
T  36626423 caaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 36626469  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 33373213 - 33373168
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 221  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||    
T  33373213 caaaaatgccccactttttcgaaaaattgcgtaaatgccctacttt 33373168  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 34506375 - 34506420
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 221  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||||    
T  34506375 caaaaataccttactttttcgaaaaattgcccaaatgccctacttt 34506420  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 43962768 - 43962821
Alignment:
Q  179 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 232  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  43962768 aaataccccactttttcgaaaaattgcagaaatgctttactttttcaggggtct 43962821  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 18655135 - 18655180
Alignment:
Q  190 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  18655135 tttttcgaaaaattgcataaatgctctactttttcagaagtctctg 18655180  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 46484321 - 46484368
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctacttttt 223  Q
    ||||||||||||| |||| | ||||||||||||||||| |||||||||    
T  46484321 caaaaatacctcatttttgcaaaaaattgcataaatgccctacttttt 46484368  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 46419362 - 46419398
Alignment:
Q  190 tttttcgaaaaattgcataaatgctctactttttcag 226  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  46419362 tttttcaaaaaattgcataaatgccctactttttcag 46419398  T

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Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7638 - 7687
Alignment:
Q  177 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  7638 aaaaatgcttcactttttcgaaaaattgcataaatgccctactttttcag 7687  T

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Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 8733 - 8684
Alignment:
Q  177 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  8733 aaaaatgcctcactttttcgaaaaattgcacaaatgccctactttttcag 8684  T

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Target: scaffold1234 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1801 - 1851
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  1801 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 1851  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 24742776 - 24742825
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 225  Q
    |||||||||| ||||||||||||||||| || |||||| |||||||||||    
T  24742776 caaaaataccccactttttcgaaaaattacacaaatgccctactttttca 24742825  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 23211332 - 23211371
Alignment:
Q  187 cactttttcgaaaaattgcataaatgctctactttttcag 226  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  23211332 cactttttcgaaaaattgcaaaaatgccctactttttcag 23211371  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 13102402 - 13102447
Alignment:
Q  176 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 221  Q
    ||||||| |||||||||||| |||||||||| |||||| |||||||    
T  13102402 caaaaatgcctcactttttcaaaaaattgcacaaatgccctacttt 13102447  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 33854406 - 33854451
Alignment:
Q  190 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 235  Q
    |||||||||||||||||||||| | ||||||||||||  |||||||    
T  33854406 tttttcgaaaaattgcataaataccctactttttcagaagtctctg 33854451  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 39195609 - 39195645
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39195609 actttttcgaaaaattgcataaataccctactttttc 39195645  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 39197866 - 39197830
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39197866 actttttcgaaaaattgcataaataccctactttttc 39197830  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 51970093 - 51970057
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    |||||||||||||||||||||||| | ||||||||||    
T  51970093 actttttcgaaaaattgcataaataccctactttttc 51970057  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 191199 - 191235
Alignment:
Q  188 actttttcgaaaaattgcataaatgctctactttttc 224  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  191199 acttttttgaaaaattgcataaatgccctactttttc 191235  T

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