View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_high_5 (Length: 487)
Name: NF3628_high_5
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 9876905 - 9877062
Alignment:
| Q |
10 |
aaaatcaaaatcattttcagttcatacaccaaacactaaaaaccctaacaaaatcatcataaatccacaaattcaagtttaattcacagtaccaaacact |
109 |
Q |
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| T |
9876905 |
aaaatcaaaatcattttcagttcatacaccaaacactaaaaaccctaacaaaatcatcataaatccacaaattcaagtttaattcacagtaccaaacact |
9877004 |
T |
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| Q |
110 |
aaaaaccttaacagaaccctaaatcaacaaattcaaaatcaatttcagttcacagcat |
167 |
Q |
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| T |
9877005 |
aaaaaccttaacagaaccctaaatcaacaaattcaaaatcaatttcagttcacagcat |
9877062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 335 - 473
Target Start/End: Original strand, 9877230 - 9877368
Alignment:
| Q |
335 |
gaatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgtt |
434 |
Q |
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| T |
9877230 |
gaatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgtt |
9877329 |
T |
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| Q |
435 |
tcttccaccagtagttttcttcacattatcgtcataatt |
473 |
Q |
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| T |
9877330 |
tcttccaccagtagttttcttcacattatcgtcataatt |
9877368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 336 - 463
Target Start/End: Original strand, 38841162 - 38841289
Alignment:
| Q |
336 |
aatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgttt |
435 |
Q |
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| T |
38841162 |
aatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcaccataaccattt |
38841261 |
T |
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| Q |
436 |
cttccaccagtagttttcttcacattat |
463 |
Q |
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| T |
38841262 |
ctcccaccagtagttttcttcacattat |
38841289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 9876741 - 9876802
Alignment:
| Q |
102 |
caaacactaaaaaccttaacagaaccctaaatcaacaaattcaaaatcaatttcagttcaca |
163 |
Q |
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| T |
9876741 |
caaacactaaaaacagtagcagaagcctaaatcaacaaattcaaaatcaatttcaattcaca |
9876802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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