View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_high_9 (Length: 399)
Name: NF3628_high_9
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 32461275 - 32460924
Alignment:
| Q |
1 |
tcacatgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtg |
100 |
Q |
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| T |
32461275 |
tcacatgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtg |
32461176 |
T |
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| Q |
101 |
gtcgcgctggtgattacatacatgcttcattgatttttgtagaaggaaattccagaatatttttgtatatgtaattattattgatgaaatttagtattaa |
200 |
Q |
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| T |
32461175 |
gtcgcgctggtgattacatacatgcttcattgatttttgtagaaggaaactccagaatatttttgtatatgtaattattattgatgaaatttagtattaa |
32461076 |
T |
|
| Q |
201 |
taatattcttttgatacactaattaccttcttgtgctttcaaaagttcttaagttcaactttacattcttttccaaacgcgtgagatttctaggtcaaaa |
300 |
Q |
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| T |
32461075 |
taatattcttttgatacattaatttccttcttgtgctttcaaaagttcataagttcaactttacattcttttccaaacgcgtgagatttctaggtcaaaa |
32460976 |
T |
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| Q |
301 |
gaaaacgtgtaaattttagctaaagtttctatattaatgtcacgttatcgat |
352 |
Q |
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| T |
32460975 |
gaaaacgtgtaaatcttagctaaagtttctatatgaatgtcacgttatcgat |
32460924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 32456780 - 32456556
Alignment:
| Q |
1 |
tcacatgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtg |
100 |
Q |
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| T |
32456780 |
tcacatgggtcatgctcagaattttgatatttctccagcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctcttatgttg |
32456681 |
T |
|
| Q |
101 |
gtcgcgctggtgattacatacatgcttcattg---------------atttttgtagaaggaaattccagaatatttttgtatatgtaattattattgat |
185 |
Q |
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| T |
32456680 |
gtagcgctggttattacatacatgtttcattgatattttttctattaattttagtagaaggaaatttcag-atatttttgtatatgtaattattattgat |
32456582 |
T |
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| Q |
186 |
gaaatttagtattaataatattcttt |
211 |
Q |
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| T |
32456581 |
gaaatttagtgttaataatattcttt |
32456556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 32440161 - 32440028
Alignment:
| Q |
5 |
atgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcg |
104 |
Q |
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| T |
32440161 |
atgggtcatgctaaaatttttgatatttctccagcacctactcctaccggtggtgctcagattctggatcaagtaattgcttgttttcttatgttagtgg |
32440062 |
T |
|
| Q |
105 |
cgctggtgattacatacatgcttcattgattttt |
138 |
Q |
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||||||| |||||||||||||| ||||||||||| |
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| T |
32440061 |
cgctggtcattacatacatgctccattgattttt |
32440028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 32463952 - 32463822
Alignment:
| Q |
6 |
tgggtcatgctcaaaattttgatatttctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcgc |
105 |
Q |
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||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| | ||||||| |||| || |
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| T |
32463952 |
tgggtcaagctcaaggttttgatatgtctccagcaccttctcctacaagtgatgctcagattcttgatcaaggaattgcttactttcttatgttggtggc |
32463853 |
T |
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| Q |
106 |
gctggtgattacatacatgcttcattgattt |
136 |
Q |
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| T |
32463852 |
gttggtgattacatacatgttccattgattt |
32463822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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