View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3628_low_11 (Length: 396)
Name: NF3628_low_11
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3628_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 46958732 - 46959094
Alignment:
| Q |
15 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
114 |
Q |
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| T |
46958732 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
46958831 |
T |
|
| Q |
115 |
gagatcaaagaatgactcaacaattggaggaacatcaaccggtgagaggatatcagatatggtcacgtctgcggtcgcatagatgaatctagctccaggg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46958832 |
gagatcaaagaatgactcaacaattggaggaacatcaacaggtgagaggatatcagatatggtcacgtctgcggtcgcatagatgaatctagctccaggg |
46958931 |
T |
|
| Q |
215 |
ttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagaggatagaaatggaaaagagcat |
314 |
Q |
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| T |
46958932 |
ttattgttactacaatcaacaaaaatggtataagagggagggtgttgagttttgtgggtgacaaggcggccagaaagaggatagaaatggaaaagagcat |
46959031 |
T |
|
| Q |
315 |
gagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtg |
377 |
Q |
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| T |
46959032 |
gagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtg |
46959094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 191 - 377
Target Start/End: Original strand, 46956073 - 46956259
Alignment:
| Q |
191 |
gcatagatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaa |
290 |
Q |
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| T |
46956073 |
gcatagatgaatctagctctggtgttatcgttactgcaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaa |
46956172 |
T |
|
| Q |
291 |
gaggatagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtg |
377 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| |||| |||||||||||||| |||||||||| |
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| T |
46956173 |
gaggatagaaatggaaaagagcatgagagaaggagtgtttgagcttctccaatagtttctcgatgaaatcttgttggttatttggtg |
46956259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 46951541 - 46951899
Alignment:
| Q |
17 |
tgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgttga |
116 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| || | |
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| T |
46951541 |
tgattcatagaacaacctatgaaaacaccatctactagctcagtgacttggatggataacaacggcatggtgtgaccgtcgtggttgattgctttattaa |
46951640 |
T |
|
| Q |
117 |
gatcaaagaatgactcaacaattggaggaacatcaaccggtgagaggatatcagatatggtcacgtctgcggtcgcatagatgaatctagctccagggtt |
216 |
Q |
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||||||| ||||||| ||||| || |||||||||| |||| | ||||||||||| || | || || |||| ||||||||||||||| | ||| |
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| T |
46951641 |
gatcaaacaatgacttaacaactgatggaacatcaattggtgtcatgatatcagatactgttgcatccaaagttgcatggatgaatctagctccggagtt |
46951740 |
T |
|
| Q |
217 |
attgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagaggatagaaatggaaaagagcatga |
316 |
Q |
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||||||||| |||||||| ||||| |||||| |||||||||||| | ||| || || ||||| || || || | |||||||||||| || | |||| || |
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| T |
46951741 |
attgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgataaaggatagaaatgaaataaagcaaga |
46951840 |
T |
|
| Q |
317 |
gagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttgg |
375 |
Q |
| |
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|||||||||| ||| || |||| || ||| | | |||||||| |||||| |||||||| |
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| T |
46951841 |
gagagggagtgtttgagtttctctaaaagattatgaatgaaatgttgttggttatttgg |
46951899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 46955876 - 46956019
Alignment:
| Q |
15 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
114 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||| || ||||||||||| |||| ||| |||||||||||||| || || ||||||||| | | |
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| T |
46955876 |
aatggttcatggaacaacctatgaaaacaccatcccctaattccgtgacttgaatggatagcaacggcatggtgtgaccatcatgattgattgctctatc |
46955975 |
T |
|
| Q |
115 |
gagatcaaagaatgactcaacaattggaggaacatcaaccggtg |
158 |
Q |
| |
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| T |
46955976 |
gagatcaaacaatgagtccacaattggcggatcatcaactggtg |
46956019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 47001736 - 47001883
Alignment:
| Q |
15 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || || ||||||||||| || ||||| | |||||||||||| || ||||| | |||| ||| |
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| T |
47001736 |
aatgattcatggaacaacctatgaaaacaccatccaataattcagtgacttgaatagacaacaaagacatggtgtgaccatcatggttaactgctctgtg |
47001835 |
T |
|
| Q |
115 |
gagatcaaagaatgactcaacaattggaggaacatcaaccggtgagag |
162 |
Q |
| |
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| | |||||||| || | ||| || || || |||||||| |||||||| |
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| T |
47001836 |
gtggtcaaagaacgatttaactatgggtgggacatcaacaggtgagag |
47001883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 46998044 - 46998198
Alignment:
| Q |
15 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
114 |
Q |
| |
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||||||||| |||||||||||| ||||||| ||||| || || || |||||||| || ||||| | ||||||||| || || ||||||| |||| ||| |
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| T |
46998044 |
aatgattcatggaacaacctataaaaacactatccaataattcagtaacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtg |
46998143 |
T |
|
| Q |
115 |
gagatcaaagaatgactcaacaattggaggaacatcaaccggtgagaggatatca |
169 |
Q |
| |
|
| | ||||||||||| | |||||| || || |||||||| |||||||| |||||| |
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|
| T |
46998144 |
gtggtcaaagaatgaatgaacaataggtggcacatcaacaggtgagagaatatca |
46998198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 46980963 - 46981079
Alignment:
| Q |
10 |
aagaaaatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgct |
109 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||| |||| || ||||||||||| || ||||| | |||||| ||||| || ||||||| |||| |
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| T |
46980963 |
aagacaatgattcatggaacaaccaatgaaaacaccatctactaattcagtgacttgaatagacaacaaagacatggtatgaccatcatggttgactgct |
46981062 |
T |
|
| Q |
110 |
ttgttgagatcaaagaa |
126 |
Q |
| |
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|||| |||||||||| |
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| T |
46981063 |
ttgtcatgatcaaagaa |
46981079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 46974981 - 46975135
Alignment:
| Q |
15 |
aatgattcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgtt |
114 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| || || || |||||||| | ||| || | |||||| ||||| || ||| ||| |||||||| |
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| T |
46974981 |
aatgattcatggaacaacctataaaaacaccatccaataattcagttacttgaatagttaataaagacatggtatgaccatcatggctgactgctttgtc |
46975080 |
T |
|
| Q |
115 |
gagatcaaagaatgactcaacaattggaggaacatcaaccggtgagaggatatca |
169 |
Q |
| |
|
|||||||||| || | ||||| || || |||||||| |||||||| |||||| |
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|
| T |
46975081 |
atgatcaaagaacgattggacaatgggtgggacatcaactggtgagagaatatca |
46975135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 46995801 - 46995950
Alignment:
| Q |
20 |
ttcagggaacaacctatgaaaacaccatccactagctctgtgacttgaattgataacaatggcatggtgtgaccgtcgtggttgattgctttgttgagat |
119 |
Q |
| |
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|||| ||||||||||||||||||||| || | || || ||||||||||| || ||||| | ||||||||| || || ||||||| |||| ||| | | |
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| T |
46995801 |
ttcatggaacaacctatgaaaacaccgtctaataattcagtgacttgaatggacaacaaagacatggtgtgtccatcatggttgactgctctgtgatggt |
46995900 |
T |
|
| Q |
120 |
caaagaatgactcaacaattggaggaacatcaaccggtgagaggatatca |
169 |
Q |
| |
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|||||||||| | |||||| || || ||||||| |||||||| |||||| |
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| T |
46995901 |
caaagaatgaatgaacaatgggtgggacatcaattggtgagagaatatca |
46995950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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