View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3628_low_14 (Length: 379)

Name: NF3628_low_14
Description: NF3628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3628_low_14
NF3628_low_14
[»] scaffold0027 (2 HSPs)
scaffold0027 (95-369)||(15596-15872)
scaffold0027 (49-181)||(16352-16484)
[»] chr4 (1 HSPs)
chr4 (37-181)||(45610747-45610891)
[»] chr2 (2 HSPs)
chr2 (4-60)||(5700087-5700143)
chr2 (75-119)||(19261648-19261692)
[»] chr7 (2 HSPs)
chr7 (45-118)||(42863805-42863876)
chr7 (75-118)||(3756718-3756761)
[»] chr3 (2 HSPs)
chr3 (39-110)||(564228-564298)
chr3 (4-86)||(46506050-46506130)
[»] chr6 (1 HSPs)
chr6 (66-118)||(5468189-5468241)


Alignment Details
Target: scaffold0027 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 95 - 369
Target Start/End: Complemental strand, 15872 - 15596
Alignment:
Q  95 ctaattggattctcatctatcaataatcaattgcaattatccatttgttccatttcatcacattctcacttttagaaccattacattatcataccaacgg 194  Q
    ||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15872 ctaattgaattcttatctatcaataatcaattgcaattattcctttgttccatttcatcacattctcacttttagaaccattacattatcataccaacag 15773  T
Q  195 tataattttgnnnnnnnnaattaatttcttcaatttctctttttaaatcaaatcaacacttgaattgaatatat---tttttatacaatgtgtatgttga 291  Q
    || ||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  15772 tacaatttt-atttttttaattaatttcttcaatttctctctttaaatcaaatcaacacttgaattgaatatataattttttatacaatgtgtatgttga 15674  T
Q  292 tgaattaagtgtgtgttaaaaatctcacatttagatgaaaaagtaaaaatagaacaacacataaatgataatattcat 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  15673 tgaatcaagtgtgtgttaaaaatctcacatttagatgaaaaagtaaaaattaaacaacacataaatgataatattcat 15596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 16484 - 16352
Alignment:
Q  49 tcttctatcttttactttcttctttcatgtactaagaataccaaccctaattggattctcatctatcaataatcaattgcaattatccatttgttccatt 148  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16484 tcttctatcttttcctttcttctttcatgtactaagaacaccaactctaattggattctcatctatcaataatcaattgtaattatccatttgttgcatt 16385  T
Q  149 tcatcacattctcacttttagaaccattacatt 181  Q
    |||||||||||||||||||||||||| ||||||    
T  16384 tcatcacattctcacttttagaaccactacatt 16352  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 45610747 - 45610891
Alignment:
Q  37 atgacttagtcttcttctatcttttac-tttcttctttcatgtactaagaataccaaccctaattggattctcatctatcaataatcaattgcaattatc 135  Q
    |||||| | |||||||||||||||| | |||||||||| |||| | ||||| || ||| |||||| | ||||||| ||| ||||||||||||||||||||    
T  45610747 atgactcattcttcttctatctttttcctttcttcttttatgtgccaagaacac-aactctaatttggttctcatatatgaataatcaattgcaattatc 45610845  T
Q  136 catttgttccatttcatcacattctcacttttagaaccattacatt 181  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  45610846 catttattctatttcatcacattctcacttttagaaccattgcatt 45610891  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 5700087 - 5700143
Alignment:
Q  4 tcctctcttcctttgatactctattgtagtgtaatgacttagtcttcttctatcttt 60  Q
    |||||||| |||||| |||||| | |||| |||||||||||||||||||||||||||    
T  5700087 tcctctctccctttggtactctctagtagagtaatgacttagtcttcttctatcttt 5700143  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 19261692 - 19261648
Alignment:
Q  75 atgtactaagaataccaaccctaattggattctcatctatcaata 119  Q
    |||||||||||| | |||| ||| |||||||||||||||||||||    
T  19261692 atgtactaagaacatcaactctagttggattctcatctatcaata 19261648  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 42863805 - 42863876
Alignment:
Q  45 gtcttcttctatcttttactttcttctttcatgtactaagaataccaaccctaattggattctcatctatcaat 118  Q
    ||||||||||||||||| |||| |||||   |||||||||||||||||| |||||||||||||  |||||||||    
T  42863805 gtcttcttctatctttttcttt-ttcttat-tgtactaagaataccaactctaattggattcttgtctatcaat 42863876  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 3756761 - 3756718
Alignment:
Q  75 atgtactaagaataccaaccctaattggattctcatctatcaat 118  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||    
T  3756761 atgtactaagaacaccaactctaattgaattctcatctatcaat 3756718  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 564228 - 564298
Alignment:
Q  39 gacttagtcttcttctatcttttactttcttctttcatgtactaagaataccaaccctaattggattctcat 110  Q
    ||||| ||||||||||||||||| ||||| ||||| ||| |||||||| |||||  |||||||| |||||||    
T  564228 gacttggtcttcttctatcttttcctttc-tcttttatgcactaagaacaccaaatctaattgggttctcat 564298  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 46506050 - 46506130
Alignment:
Q  4 tcctctcttcctttgatactctattgtagtgtaatgacttagtcttcttctatcttttactttcttctttcatgtactaagaa 86  Q
    ||||||||||||| | |||||  | |||| ||||||||||||||||||| |||| ||| ||||| ||||||||||||| ||||    
T  46506050 tcctctcttccttgggtactccctagtagagtaatgacttagtcttcttgtatc-tttcctttc-tctttcatgtacttagaa 46506130  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 5468241 - 5468189
Alignment:
Q  66 tcttctttcatgtactaagaataccaaccctaattggattctcatctatcaat 118  Q
    |||||||| |||||||||||| |||| |  ||||||| |||||||||||||||    
T  5468241 tcttcttttatgtactaagaacaccagctataattgggttctcatctatcaat 5468189  T

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